View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_14 (Length: 552)
Name: NF17755_high_14
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 3 - 517
Target Start/End: Original strand, 10505891 - 10506405
Alignment:
| Q |
3 |
tggaacggttgggattgcagaagttataacaggtattgatctttatgtgtgtcctcgtagtgacacaataatcaccatacttgcaaaatatggaagagaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10505891 |
tggaacggttgggattgcagaagttataacaggtattgatctttatgtgtgtcctcgtagtgacacaataatcaccatacttgcaaaatatggaggagaa |
10505990 |
T |
|
| Q |
103 |
acttttacagagaacaaagattccctcattggttgcgttgtatggcgaagaaaccaaataaaccatgttaactctttgcaccagaaatcattggaatcat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| | ||||| |
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| T |
10505991 |
acttttacagagaacaaagattccctcattggttgcgttgtatggcgaaaaaaccaaataaaccttgttaactcttttcaccagaaatcattaggatcat |
10506090 |
T |
|
| Q |
203 |
caagnnnnnnngatcctattctcgtgtggtctccgattcgcacgcctttagaatcttcgagaaaaaatgattatagtcccgtgtggtctccgattcgcat |
302 |
Q |
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| T |
10506091 |
caagaaaaaaagatcctattctcgtgtggtctccgattcgcacgcctttagaatcttcgagaaaaaatgattatagtcccgtgtggtctccgattcgcat |
10506190 |
T |
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| Q |
303 |
gtctttcgaatcatcgaccaaaaatgattctagtaccgtgtggtctccgattcgcacacctttcgaatcatcaacaaaaaatgaaccggttcttgatatt |
402 |
Q |
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| T |
10506191 |
gtctttcgaatcatcgaccaaaaaggattctagtcccgtgtggtctccgattcgcacgcctttcgaatcatcaacaaaaaatgaaccagttcttgatatt |
10506290 |
T |
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| Q |
403 |
actaagcaaaatttgcgattatttggctactatagtgacatagtaaaatcagaagacgctccaaatatttcacaatcagtatgtgctgaagccgaaacat |
502 |
Q |
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| T |
10506291 |
actaagcaaaatttgcgattatttggctactatagtgacatagtaaaatcggaagacactccaaatatttcacaatcagtatgtgctgaagccgaaacat |
10506390 |
T |
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| Q |
503 |
caaatcttaacacaa |
517 |
Q |
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||||||||||||||| |
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| T |
10506391 |
caaatcttaacacaa |
10506405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 24404495 - 24404663
Alignment:
| Q |
3 |
tggaacggttgggattgcagaagttataacaggtattgatctttatgtgtgtcctcgtagtgacacaataatcaccatacttgcaaaatatggaa----- |
97 |
Q |
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||||| ||||||| ||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
24404495 |
tggaagggttgggcttgcaaaagttataactggcattgatctttatgtgtgtcctcctagtgacacaataatcaccatacttggaaaatatggatacctc |
24404594 |
T |
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| Q |
98 |
ga-gaaac------ttttacagagaacaaagattccctcattggttgcgttgtatggcgaagaaaccaa |
159 |
Q |
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| T |
24404595 |
gacgaaagcacacattttaaagagaacaaagattccctaattggttgtgttgtatggagaagaaaccaa |
24404663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 469
Target Start/End: Original strand, 24405008 - 24405048
Alignment:
| Q |
429 |
ctactatagtgacatagtaaaatcagaagacgctccaaata |
469 |
Q |
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| T |
24405008 |
ctactatagtgacttagtcaaatcagaagacactccaaata |
24405048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 27986243 - 27986184
Alignment:
| Q |
37 |
attgatctttatgtgtgtcctcgtagtgacacaataatcaccatacttgcaaaatatgga |
96 |
Q |
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| T |
27986243 |
attgatctttatgtgtgtcctcttagtgacgcgattatcaccatacttgagaaatatgga |
27986184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 42303505 - 42303557
Alignment:
| Q |
360 |
acctttcgaatcatcaacaaaaaatgaaccggttcttgatattactaagcaaa |
412 |
Q |
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|||||| |||||||||||||||| ||| | | |||||||||||||||||||| |
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| T |
42303505 |
acctttagaatcatcaacaaaaagtgatcaaggtcttgatattactaagcaaa |
42303557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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