View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_16 (Length: 523)

Name: NF17755_high_16
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_16
NF17755_high_16
[»] chr7 (5 HSPs)
chr7 (14-505)||(42414892-42415383)
chr7 (385-499)||(38176242-38176356)
chr7 (385-499)||(8178029-8178143)
chr7 (385-501)||(38195565-38195681)
chr7 (385-429)||(10486560-10486604)
[»] scaffold0094 (1 HSPs)
scaffold0094 (14-505)||(14856-15344)
[»] chr3 (8 HSPs)
chr3 (14-505)||(53919917-53920411)
chr3 (271-501)||(1929998-1930228)
chr3 (385-499)||(1527265-1527379)
chr3 (385-505)||(25500952-25501072)
chr3 (246-440)||(26924303-26924496)
chr3 (459-501)||(8690524-8690566)
chr3 (459-501)||(9042393-9042435)
chr3 (380-433)||(40316324-40316377)
[»] chr2 (8 HSPs)
chr2 (163-499)||(35581408-35581743)
chr2 (385-499)||(4318722-4318836)
chr2 (385-501)||(31015443-31015559)
chr2 (385-499)||(28626356-28626470)
chr2 (221-332)||(29370229-29370340)
chr2 (385-499)||(34212768-34212882)
chr2 (389-494)||(6409598-6409703)
chr2 (389-433)||(40357048-40357092)
[»] chr6 (4 HSPs)
chr6 (312-501)||(1100971-1101160)
chr6 (242-363)||(1083075-1083197)
chr6 (242-363)||(1085715-1085837)
chr6 (405-495)||(28909706-28909796)
[»] chr8 (6 HSPs)
chr8 (385-505)||(31385773-31385893)
chr8 (385-499)||(8618319-8618433)
chr8 (384-435)||(2704026-2704077)
chr8 (385-434)||(15074411-15074460)
chr8 (277-346)||(31385930-31385999)
chr8 (375-430)||(11743945-11744000)
[»] chr5 (7 HSPs)
chr5 (385-501)||(12186854-12186970)
chr5 (385-499)||(22497645-22497759)
chr5 (389-501)||(4428968-4429080)
chr5 (380-450)||(41787904-41787974)
chr5 (385-491)||(43391059-43391165)
chr5 (380-432)||(32912850-32912902)
chr5 (385-417)||(26917409-26917441)
[»] chr1 (6 HSPs)
chr1 (375-499)||(4816699-4816823)
chr1 (385-499)||(46342966-46343080)
chr1 (385-446)||(19023321-19023382)
chr1 (385-500)||(5299436-5299551)
chr1 (385-500)||(46496791-46496906)
chr1 (385-499)||(44585732-44585846)
[»] chr4 (1 HSPs)
chr4 (385-499)||(29542205-29542319)


Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 42414892 - 42415383
Alignment:
14 gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
42414892 gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcgaggagcaaa 42414991  T
114 actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42414992 actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga 42415091  T
214 agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt 313  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
42415092 agcagttggattgcgtgatgccatctcttggcttggcagattaggactgtcgaaggtgcttgtagaactagattgcaaactagtggttgatagcattttt 42415191  T
314 gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
42415192 gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcggtcgcgtttaaaacattatccaaactttaggataagttttgttaggagac 42415291  T
414 aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
42415292 aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaggagtttgatttgattccatcatatattgaaact 42415383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 38176356 - 38176242
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
38176356 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg 38176257  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
38176256 attccatcttgtatt 38176242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 8178143 - 8178029
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||||| ||| | |||| ||||| ||| ||| |  ||||||| |    
8178143 aaactttaagataagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttttgattgg 8178044  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
8178043 attccatcttgtatt 8178029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 38195681 - 38195565
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||  |  |||||||||| |||| |||||||||||  |||||| ||||| | |  ||| ||||| ||||||||| |||  |||||    
38195681 aaactttaagataagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcaccaagtgttcaatttg 38195582  T
485 attccatcttgtattga 501  Q
    |||||||||||||||||    
38195581 attccatcttgtattga 38195565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 10486604 - 10486560
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgc 429  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
10486604 aaactttaagataagttttgttaggagacaagcaaattatgtcgc 10486560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 14856 - 15344
Alignment:
14 gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
14856 gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgagaagtttgttaaatgcaacgtggacgcagccatgttcgaggagcaaa 14955  T
114 actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga 213  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
14956 actattttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccgcaatctggtatgaaggcaaacctctcccacgagaagcaga 15055  T
214 agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt 313  Q
    |||||||||||||| ||||  |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
15056 agcagttggattgcgtgatttcatctcttggcttggaagattaggactgtcgaaggtgcttatagaactagattgcaaactagtggttgatagcattttt 15155  T
314 gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagac 413  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
15156 gataggaatagcaatcaagcggagtttg---gtatcatatccgaatgtcggtcgtgtttaaaacattatccaaactttaagataagttttgttaggagac 15252  T
414 aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||    
15253 aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttaattccattttatattgaaact 15344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 53919917 - 53920411
Alignment:
14 gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
53919917 gaacctgtgcaaaatcagtagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggatgcagccatgttcgaggagcaaa 53920016  T
114 actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||    
53920017 actgttttgggataggtatgtgcattcggaatcatcgaggtctgttcgtaaaggcagctacaacctggtatgaaggcaaacctctcccacgagaagaaga 53920116  T
214 agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt 313  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||||    
53920117 agcagttggattgcgtgatgccatctcttggcttggcagattaggactgtcgaaggtgcttatagaactggattgcaaactagtgtttgatagcattttt 53920216  T
314 gataggaat---agcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttagga 410  Q
    |||||||||   |||||||||||||||||||||||| ||||||| ||||| | ||||| |||||||||||||| |||||||||||| ||||||||||| |    
53920217 gataggaatagcagcaatcaagcggagtttggtagtctcatatctgaatgccggtcgcttttaaaacattatccaaactttaagatgagttttgttagaa 53920316  T
411 gacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
53920317 gacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgttttgattccatcttgtattgaaact 53920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 501
Target Start/End: Original strand, 1929998 - 1930228
Alignment:
271 gcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgt 370  Q
    |||||||||||||||||| ||  |||| |||||||||||  ||||||||||||  |||||| |||||||||||||||| |||||||| |||||  | | |    
1929998 gcttatagaactagattgtaagctagtggttgatagcatagttgataggaatatgaatcaatcggagtttggtagtattatatccgattgtcaagctctt 1930097  T
371 ttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcacc 470  Q
    ||| || |  ||| ||||||||| |||||||||| ||||||| | ||||||| |||| ||||||| |||||  ||||||| |||||  ||||||||||||    
1930098 ttacaataacatccaaactttaaaataagttttgctaggagaaatgctaattatgtcactcatactttagcaggggcgtcaagattacatgctcgtcacc 1930197  T
471 aagagtttgatttgattccatcttgtattga 501  Q
    || ||||||||||||||||||||||||||||    
1930198 aacagtttgatttgattccatcttgtattga 1930228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 1527265 - 1527379
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
1527265 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg 1527364  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
1527365 attccatcttgtatt 1527379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 25500952 - 25501072
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||| || ||| ||||||||||| |||| |||||| ||||  ||||| ||||| || | |||| |||||||||||| ||  ||| |||||    
25500952 aaactttaagataaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttg 25501051  T
485 attccatcttgtattgaaact 505  Q
    |||||||||||||||||||||    
25501052 attccatcttgtattgaaact 25501072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 440
Target Start/End: Original strand, 26924303 - 26924496
Alignment:
246 ttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtag 345  Q
    |||| |||||||| || |||||||||||||||||||||||||| |   ||||| || |||||||  |||||||||||| ||| ||||  |||||||||||    
26924303 ttggtagattaggcctatcgaaggtgcttatagaactagattgtacgctagtaatttatagcatagttgataggaataccaaccaagtagagtttggtag 26924402  T
346 tatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttag 440  Q
     || ||||| || |||||  |   ||| ||| |  ||| ||| |||||||||||||||  || |||||||| |||| ||||||||||||| ||||    
26924403 cattatatctgattgtcaagc-ttttttaaagaacatccaaagtttaagataagttttactaagagacaagttaatgttgtcgctcatactttag 26924496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 8690524 - 8690566
Alignment:
459 atgctcgtcaccaagagtttgatttgattccatcttgtattga 501  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
8690524 atgctcgtcaccaggtgtttgatttgattccatcgtgtattga 8690566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 9042393 - 9042435
Alignment:
459 atgctcgtcaccaagagtttgatttgattccatcttgtattga 501  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
9042393 atgctcgtcaccaggtgtttgatttgattccatcgtgtattga 9042435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 40316324 - 40316377
Alignment:
380 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcat 433  Q
    |||| ||||||||| |||||||| |||| |||||||||||||| ||| ||||||    
40316324 tatccaaactttaacataagtttagttatgagacaagctaattatgttgctcat 40316377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 499
Target Start/End: Complemental strand, 35581743 - 35581408
Alignment:
163 aaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcagaagcagttggattgcatgatgccatctactggcttggcagattaggactg 262  Q
    ||||||||||||||  ||| |||||||||| |||| ||||  |||||| |||||||| ||||| |||||||| || || ||||||||   || |||||      
35581743 aaaggcagccacaacttggcatgaaggcaatcctcccccaaaagaagcggaagcagtaggattacatgatgctatttattggcttggtctatgaggacca 35581644  T
263 tcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtc 362  Q
    || ||||||| |||||||||||||||| || ||||||||||||||||  ||||| |||| | |||| ||| ||| ||||||| ||||||||  |||||||    
35581643 tcaaaggtgcatatagaactagattgccaagtagtagttgatagcataattgatgggaacaccaataaagtggactttggtaatatcatatatgaatgtc 35581544  T
363 agtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgc 462  Q
    | |||| |||| |||| ||||  ||||||||||||||||||||||| |||||| ||||| ||||||||||||| |  || |||| ||| |||||| || |    
35581543 actcgcttttacaacaatatcataactttaagataagttttgttagaagacaaactaatattgtcgctcatac-tctgcaagggtgtcaagattgtatcc 35581445  T
463 tcgtcaccaagagtttgatttgattccatcttgtatt 499  Q
    | ||||| ||   ||||||||||||||||||| ||||    
35581444 tagtcactaaatttttgatttgattccatcttatatt 35581408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 4318836 - 4318722
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||||    
4318836 aaactttaagataagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttg 4318737  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
4318736 attccatcttgtatt 4318722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 31015559 - 31015443
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||| |||||||||||| ||||| ||||||||| | ||||  ||||| | || |||  || || ||||||||||||||| ||||||||||    
31015559 aaactttaagataaattttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatttg 31015460  T
485 attccatcttgtattga 501  Q
    |||||||||||||||||    
31015459 attccatcttgtattga 31015443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 28626470 - 28626356
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||  || |||| || ||| | |||  | |||||||||||||  |||||||||    
28626470 aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcaccaagtctttgatttg 28626371  T
485 attccatcttgtatt 499  Q
    ||||||| |||||||    
28626370 attccattttgtatt 28626356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 29370229 - 29370340
Alignment:
221 ggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgatagga 320  Q
    ||||| |||||||| || |  |||||||| ||||||||  |||| ||||||||||||||||||||||| ||  |||| |||||||||||  |||||||||    
29370229 ggattacatgatgctatttcttggcttggtagattaggcttgtcaaaggtgcttatagaactagattgtaagctagtggttgatagcataattgatagga 29370328  T
321 atagcaatcaag 332  Q
    |||  |||||||    
29370329 atactaatcaag 29370340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 34212768 - 34212882
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||| |||  ||||| || | ||| | |||  ||| || |||||| |  |||||||||    
34212768 aaactttaagataaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgatttg 34212867  T
485 attccatcttgtatt 499  Q
    |||||||||| ||||    
34212868 attccatcttatatt 34212882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 494
Target Start/End: Original strand, 6409598 - 6409703
Alignment:
389 tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc 488  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| ||  || ||||| | ||| | |||  | |||||||||||||  ||| |||||||||    
6409598 tttaagataagttttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatattacaagctcgtcaccaagtctttaatttgattc 6409697  T
489 catctt 494  Q
    ||||||    
6409698 catctt 6409703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 40357092 - 40357048
Alignment:
389 tttaagataagttttgttaggagacaagctaattttgtcgctcat 433  Q
    |||||||||||||| |||| ||||||| |||||||||| ||||||    
40357092 tttaagataagtttagttatgagacaaactaattttgttgctcat 40357048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 312 - 501
Target Start/End: Complemental strand, 1101160 - 1100971
Alignment:
312 ttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggag 411  Q
    |||||| ||||  ||| |||||| ||||| ||||||| |||||||| |||||  | | |||| ||||  ||| ||||||||||| |||||||| ||||||    
1101160 ttgatatgaatgccaaccaagcgaagttttgtagtattatatccgattgtcaagctcttttacaacaacatccaaactttaagaaaagttttgctaggag 1101061  T
412 acaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattga 501  Q
    |||| | ||||||||||||||||| ||||   ||| ||| |||||  |||||||||||||| ||||||||||||||||||||||||||||    
1101060 acaatcaaattttgtcgctcatactttagtaggggagtcaagattacatgctcgtcaccaacagtttgatttgattccatcttgtattga 1100971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 1083197 - 1083075
Alignment:
242 tggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaa-ttagtagttgatagcatttttgataggaatagcaatcaagcggagttt 340  Q
    |||||||| ||||||||  | || |||||| |||||||||||||||| ||| || ||  ||||||||||  | |||||||| | ||| |||| |||||||    
1083197 tggcttggtagattaggcttatcaaaggtgtttatagaactagattgtaaacttggtgattgatagcatagtcgataggaagaccaaccaagtggagttt 1083098  T
341 ggtagtatcatatccgaatgtca 363  Q
    ||| |||||||||| || |||||    
1083097 ggttgtatcatatctgattgtca 1083075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 1085837 - 1085715
Alignment:
242 tggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaa-ttagtagttgatagcatttttgataggaatagcaatcaagcggagttt 340  Q
    |||||||| ||||||||  | || |||||| |||||||||||||||| ||| || ||  ||||||||||  | |||||||| | ||| |||| |||||||    
1085837 tggcttggtagattaggcttatcaaaggtgtttatagaactagattgtaaacttggtgattgatagcatagtcgataggaagaccaaccaagtggagttt 1085738  T
341 ggtagtatcatatccgaatgtca 363  Q
    ||| |||||||||| || |||||    
1085737 ggttgtatcatatctgattgtca 1085715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 28909796 - 28909706
Alignment:
405 ttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttg 495  Q
    ||||||||||||| ||| ||||| ||||||  || ||||||| ||| | |||  | |||||||||||||  ||||||||||||||||||||    
28909796 ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttg 28909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 31385893 - 31385773
Alignment:
385 aaactttaagat-aagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgattt 483  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||| | |||  ||||| |||| ||| ||||||||||    
31385893 aaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagc-agggtgtcaaaattacatgcttgtcatcaacagtttgattt 31385795  T
484 gattccatcttgtattgaaact 505  Q
    ||||| ||||||| ||||||||    
31385794 gattctatcttgtgttgaaact 31385773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 8618433 - 8618319
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||||||  ||||| |||| ||| | |||  || ||||||||||    || ||||||    
8618433 aaacttcaagataagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgatttg 8618334  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
8618333 attccatcttgtatt 8618319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 2704077 - 2704026
Alignment:
384 gaaactttaagataagttttgttaggagacaagctaattttgtcgctcatac 435  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||    
2704077 gaaactttaagataagttttgttaggagacaagcaaattatgtcgctcatac 2704026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 15074460 - 15074411
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcata 434  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||    
15074460 aaactttaagataagttttgttagaagacaagcaaattgtgtcgctcata 15074411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 31385999 - 31385930
Alignment:
277 agaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagt 346  Q
    ||||||||| |||||  |||| |||||||||||| |||||||||| | ||||||| ||||||| ||||||    
31385999 agaactagactgcaagctagtggttgatagcattcttgataggaacaccaatcaaacggagttcggtagt 31385930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 11743945 - 11744000
Alignment:
375 aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgct 430  Q
    ||||||||| |||||||||||||| |||||| ||||||||| | |||| |||||||    
11743945 aacattatccaaactttaagataaattttgtaaggagacaaacaaattatgtcgct 11744000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 12186854 - 12186970
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||| ||||| ||||  ||||| ||||  ||||| | || |||  |  || ||||||||||||||| ||||||||||    
12186854 aaactttaagataagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatttg 12186953  T
485 attccatcttgtattga 501  Q
    |||||||||||||||||    
12186954 attccatcttgtattga 12186970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 22497759 - 22497645
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||||  ||||| |||| ||| | |||  ||||||||||||  |  |||||||||    
22497759 aaactttaagataagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgatttg 22497660  T
485 attccatcttgtatt 499  Q
    ||||| |||||||||    
22497659 attccttcttgtatt 22497645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 501
Target Start/End: Original strand, 4428968 - 4429080
Alignment:
389 tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc 488  Q
    ||||||||||||||||||||||| ||||| |||| |||| | ||||  ||||| | || |||  || || |||||||| | |||  ||||||||||||||    
4428968 tttaagataagttttgttaggaggcaagcaaattctgtcacccatagcttagcaaaggtgtcaggaatgtatgctcgttagcaaatgtttgatttgattc 4429067  T
489 catcttgtattga 501  Q
    |||||| ||||||    
4429068 catcttctattga 4429080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 450
Target Start/End: Complemental strand, 41787974 - 41787904
Alignment:
380 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtc 450  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| ||| ||||||   ||||| ||||||||    
41787974 tatccaaactttgagataaattttgttaggagacaagctaattatgttgctcattgattagcaagggcgtc 41787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 491
Target Start/End: Complemental strand, 43391165 - 43391059
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||| |||||||||| || |||||||||| |||| |||||| ||||| ||||| |||| ||| | | || ||||| |||| || |  |||||||||    
43391165 aaactttatgataagttttattcggagacaagcaaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttg 43391066  T
485 attccat 491  Q
    |||||||    
43391065 attccat 43391059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 32912850 - 32912902
Alignment:
380 tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctca 432  Q
    |||| ||||||||||||||||||||||||| ||| ||| |||||||| |||||    
32912850 tatccaaactttaagataagttttgttaggcgacgagcaaattttgttgctca 32912902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 26917409 - 26917441
Alignment:
385 aaactttaagataagttttgttaggagacaagc 417  Q
    ||||||||||||||||||| |||||||||||||    
26917409 aaactttaagataagttttattaggagacaagc 26917441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 4816699 - 4816823
Alignment:
375 aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaaga 474  Q
    |||||| || |||||||||||||| || ||| ||||||||||| |||| |||||| ||||  ||||| |||| ||| | |||| |||||||||||||||     
4816699 aacattttccaaactttaagataaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagt 4816798  T
475 gtttgatttgattccatcttgtatt 499  Q
     |||||||||||| |||||| ||||    
4816799 ctttgatttgatttcatcttatatt 4816823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 46342966 - 46343080
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||  ||||| |||  ||| | |||  ||| | |||||||    |||||||||    
46342966 aaactctaagataagttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgatttg 46343065  T
485 attccatcttgtatt 499  Q
    ||| |||||||||||    
46343066 atttcatcttgtatt 46343080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 19023382 - 19023321
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctaggg 446  Q
    ||||||||||||||||||||||||||||||| | |||| | || ||||||  ||||||||||    
19023382 aaactttaagataagttttgttaggagacaaacaaattatatcactcatagcttagctaggg 19023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 500
Target Start/End: Original strand, 5299436 - 5299551
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||| ||||||||| |||||||| ||||  ||||| |||   ||||| |||| | | | ||||  |||||||||||| |  ||  |||||    
5299436 aaactttaagataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgtcaccacgttttcaatttg 5299535  T
485 attccatcttgtattg 500  Q
    ||||||||||||||||    
5299536 attccatcttgtattg 5299551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 500
Target Start/End: Original strand, 46496791 - 46496906
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||| ||||||||||||||||| ||||||   |||| |||   ||||| | || | | |  ||| ||||||||||||| |  ||| |||||    
46496791 aaactttaagataggttttgttaggagacaaactaattcgatcgcacattgcttagcaaaggaggcaaatttgtatgctcgtcaccaggttttttatttg 46496890  T
485 attccatcttgtattg 500  Q
    ||||||||||||||||    
46496891 attccatcttgtattg 46496906  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 44585846 - 44585732
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    ||||||||||||||||||||| ||||||||  | ||| ||||||||||||  ||||| |||| ||  |  ||  ||| | |||||||||  ||||||||     
44585846 aaactttaagataagttttgtcaggagacagacgaatgttgtcgctcatagcttagcaagggtgttgatgttacatgtttgtcaccaagtttttgattta 44585747  T
485 attccatcttgtatt 499  Q
    |||||||| ||||||    
44585746 attccatcatgtatt 44585732  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 29542205 - 29542319
Alignment:
385 aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg 484  Q
    |||||||||||||| ||||||||||| |||||| |||| |||||| |||   |||||||||| ||| | |||| | ||||||||||| |  ||||||| |    
29542205 aaactttaagataaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtacgctcgtcaccatgtttttgattcg 29542304  T
485 attccatcttgtatt 499  Q
    |||||||||||||||    
29542305 attccatcttgtatt 29542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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