View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_20 (Length: 499)
Name: NF17755_high_20
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Original strand, 52577680 - 52578148
Alignment:
| Q |
12 |
gcagcacagatgtggttccctgcactatatatatgttgctgttaagtcttggaaacattgtttttataaaaatgctttgatttgatgtgctagacgaaca |
111 |
Q |
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| T |
52577680 |
gcagcacaaatgtggttccctgcactatatatatgttgctgttaagtcttggaaacattgtttttataaaaatgctttgatttgatgtgctagacgaact |
52577779 |
T |
|
| Q |
112 |
agcattttaattgaggggaggaacaaaagactatatattaagatgatgtttatattggaaatgcctaatcaccttattccctcttgagatgcgaaggttt |
211 |
Q |
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| T |
52577780 |
agcattttaattgaggggaggaacaaaagactatatattaagatgatgtttatattggaaatgcctaatcaccttattccctcttgagatgcgaaggttt |
52577879 |
T |
|
| Q |
212 |
cctgaatgcgataagtatgtggtgtctaaccaaccctttgcttcatctccgagaagcttaaatggaactggatatggaactttaaatggaagaaatttga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577880 |
cctgaatgcgataagtatgtggtgtctaaccaaccctttgcttcatctccgagaagcttaaatggaactggatatggaactttaaatggaagaaatttga |
52577979 |
T |
|
| Q |
312 |
aagaaaaggcagctctgtcaaacctaaaaaggattctttttccatctccaatggatgctgctgcctatttaaattgaaggacatgagtataagaacaaga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577980 |
aagaaaaggcagctctgtcaaacctaaaaaggattctttttccatctccaatggatgctgctgcctatttaaattgaaggacatgagtataagaacaaga |
52578079 |
T |
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| Q |
412 |
acgagagcatcaaggaagtctttgtcccacaagatagggtcagacatatagatcaaacaacatcaattg |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52578080 |
acgagagcatcaaggaagtctttgtcccacaagatagggtcggacatatagatcaaacaacatcaattg |
52578148 |
T |
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