View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_21 (Length: 491)
Name: NF17755_high_21
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 35277939 - 35277466
Alignment:
| Q |
17 |
ttatctatttaggtctcacaagtctcaaa-gattaatcttcgtagttacacgcaatgatattatgtttnnnnnnnn-tgctataaatttaatttgtaacc |
114 |
Q |
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| T |
35277939 |
ttatctatttaggtctcacaagtttcaaaagattagtcttcgtagttacgcgcaatgatattatgtttaaaaaaaaatgctataaatttgatatgtaacc |
35277840 |
T |
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| Q |
115 |
acttgctattgagatcatgtctacacccaactaaaagttaggctacatacattgtgttcgtcaaaacataattacttaattatttactcctaatctttta |
214 |
Q |
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| T |
35277839 |
acttgctattgagatcatgtctacacccaactaaaagttaggctacat----tgtgttcgccaaaacttaattacttaattatttacttctaatctttta |
35277744 |
T |
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| Q |
215 |
tttaatttaacacgtt--------------ggatccgcgagccataaaagatagaaatgcacatgacagatctgtgacatgtagttttttcttgactgtt |
300 |
Q |
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| T |
35277743 |
tttaatttaacacgtttgaacattcaaaatggatccgcgagccataaaagatagaaatgcacatgacagatctgtgacatgtagttttttcttgactgtt |
35277644 |
T |
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| Q |
301 |
gcaatatacgtacagataacaatttattaattcctctaaaaaacaattatggaataacaattcattacnnnnnnnnnctgacaaaaacaaatataaatta |
400 |
Q |
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| T |
35277643 |
gcaatataagtacagataacaatttattaattcctctaaaaaacaattatggaataacaattcattactttttttttctgacaaaaacaaatataaatta |
35277544 |
T |
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| Q |
401 |
cttaacaaacacgttccttttatgnnnnnnnttggatattgaaatatttcatacactttatgctttttctcccctttg |
478 |
Q |
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| T |
35277543 |
cttaacaaacacgttccttttatgaaaaaaattggatattgaaatatttcatacactttatgctttttctcccttttg |
35277466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 35283693 - 35283621
Alignment:
| Q |
229 |
ttggatccgcgagccataaaagatagaaatgcacatgacagatctgtgacatgtagttttttcttgactgttg |
301 |
Q |
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|||||||||| | ||| ||||| |||||||||||| ||||||| ||| | |||| |||||||||||||||| |
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| T |
35283693 |
ttggatccgcaatccacgaaagaatgaaatgcacatgccagatctttgagaagtagatttttcttgactgttg |
35283621 |
T |
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