View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_25 (Length: 426)
Name: NF17755_high_25
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 5053515 - 5053915
Alignment:
| Q |
7 |
agcagaacctgtgaaattcaacaaaccaccagcaatacaaaacccagaattgcagaagattagtagaatcaacagcacagaaaaagcgctcatttcactt |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5053515 |
agcagaacttgtgaaattcaacaaaccaccagcaatacaaaacccagaattgcagaagattagtagaatcagcagcacagaaaaagcgctcatttcactt |
5053614 |
T |
|
| Q |
107 |
gtttgcatcacagaatttgaatcaatttctgaaaactatacaactactattgtcccttgacggtgacaaaactaatactaccaactatagattatatata |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5053615 |
gttagcatcacagaatttgaatcaatttctgaaaactatacaactactattgtccctcgacggtggcaaaactaatactaccaactatagattatatata |
5053714 |
T |
|
| Q |
207 |
gtggttctagttatgttgcaaacctttatattgcagaaaaatgcaggaataagatgtcaaaattgcggttgcaatactgttgtggagactttaaaatccc |
306 |
Q |
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| T |
5053715 |
gtggttctagttacgttgcaaacctttatattgcagaaaaatgcgggaataagatgtcaaaattgcggttgcaatactgttgtggagactttaaaatccc |
5053814 |
T |
|
| Q |
307 |
ttatattacagtggcaatactgttgcggaggcttcaaaatcccttatattaccgtggcaatactgttgcggagacttcaaaatccttgatactgcagttg |
406 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053815 |
ttatattacagtggcaatactgttgtggaggcttcaaaatcccttatattaccgtggcaatactgttgcggagacttcaaaatccttgatactgcagttg |
5053914 |
T |
|
| Q |
407 |
c |
407 |
Q |
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| T |
5053915 |
c |
5053915 |
T |
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