View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_27 (Length: 411)
Name: NF17755_high_27
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_27 |
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| [»] scaffold0180 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 97 - 402
Target Start/End: Complemental strand, 40537675 - 40537362
Alignment:
| Q |
97 |
agctaatgttacggagataacgacccctaaagttgttactgtttagttttttcttctactgggcttaggctcctttgttnnnnnnnnnnnnngaattaat |
196 |
Q |
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| T |
40537675 |
agctgatgttacggaaataacgacccctaaagttgtcactgtttagttttttcttctgctgggcttaggctcctttgttaaaaaaaaaaaaaataataat |
40537576 |
T |
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| Q |
197 |
gtttttggcgtaaaaaa-------taaaacacgagtttgagtttttccgtnnnnnnngaaagagtttgagnnnnnnnngggttgaatgtcattaatgatt |
289 |
Q |
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| T |
40537575 |
gtttttggcgtaaaaaagaaaaaataaaacacgagtttgagtttttccgtaaaaaaagaaagagtttgagttttttt-gggttgaatgtcattaatgatt |
40537477 |
T |
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| Q |
290 |
ctgacaaggtgcgttatttgaccacgtgttggctgttggaactat--gtactcgataaggtgacttttaggcttggccgcttcgtttgtttttcactcga |
387 |
Q |
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| T |
40537476 |
ctgacaaggtgcgttattcgaccacgtgttggctgttggaactatatgtactcgacaaggtgacttttaggcttggccgcttcgtttgtttttcactcga |
40537377 |
T |
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| Q |
388 |
tgttctctgctcctc |
402 |
Q |
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| T |
40537376 |
tgttctttgctcctc |
40537362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40537804 - 40537706
Alignment:
| Q |
1 |
aattaaagtgtgtcattcttatcgcgagacaaacgcatgtgcagatgcacttgcatacatagggtgcgatcatggttctggtctgcggatgtatgaagc |
99 |
Q |
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| T |
40537804 |
aattaaagtgtgtcattcttatcgcgagacaaacacatgtgcagatgcacttgcatacatagggtgtgatcatggttttggtctgcgggtgtatgaagc |
40537706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 20488 - 20566
Alignment:
| Q |
97 |
agctaatgttacggagataacgacccctaaagttgttactgtttagttttttcttctactgggcttaggctcctttgtt |
175 |
Q |
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|||| ||||||||| |||||||||||||| |||||||| ||||||||||| |||||| |||||||||||| |||||||| |
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| T |
20488 |
agctgatgttacggggataacgacccctagagttgttaatgtttagttttctcttcttctgggcttaggcccctttgtt |
20566 |
T |
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