View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_29 (Length: 387)

Name: NF17755_high_29
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_29
NF17755_high_29
[»] chr2 (4 HSPs)
chr2 (9-368)||(37335419-37335778)
chr2 (9-59)||(3989091-3989141)
chr2 (9-44)||(21393688-21393723)
chr2 (9-46)||(43331118-43331155)
[»] chr3 (4 HSPs)
chr3 (9-59)||(41883223-41883273)
chr3 (9-44)||(8362045-8362080)
chr3 (9-44)||(9797029-9797064)
chr3 (13-44)||(41224263-41224294)
[»] chr8 (13 HSPs)
chr8 (9-55)||(3890616-3890662)
chr8 (9-56)||(3817930-3817977)
chr8 (9-44)||(31347782-31347817)
chr8 (9-59)||(15972877-15972927)
chr8 (9-42)||(7017865-7017898)
chr8 (9-46)||(20091801-20091838)
chr8 (9-42)||(27835453-27835486)
chr8 (9-46)||(32064773-32064810)
chr8 (9-46)||(34665410-34665447)
chr8 (9-46)||(37132658-37132695)
chr8 (9-46)||(38016999-38017036)
chr8 (9-46)||(42755042-42755079)
chr8 (10-50)||(3597042-3597082)
[»] chr4 (12 HSPs)
chr4 (9-59)||(9088885-9088935)
chr4 (9-59)||(17655445-17655495)
chr4 (9-46)||(25063397-25063434)
chr4 (9-46)||(33530688-33530725)
chr4 (9-44)||(24392697-24392732)
chr4 (9-59)||(37219640-37219690)
chr4 (9-46)||(10442789-10442826)
chr4 (9-46)||(21802322-21802359)
chr4 (9-46)||(22199289-22199326)
chr4 (9-46)||(31078819-31078856)
chr4 (9-42)||(47290272-47290305)
chr4 (9-46)||(49387888-49387925)
[»] chr5 (7 HSPs)
chr5 (11-59)||(31640942-31640990)
chr5 (9-44)||(17545685-17545720)
chr5 (9-44)||(22913054-22913089)
chr5 (9-47)||(31640762-31640800)
chr5 (9-46)||(6043511-6043548)
chr5 (9-46)||(8145403-8145440)
chr5 (9-46)||(10458425-10458462)
[»] chr7 (9 HSPs)
chr7 (9-59)||(30848584-30848634)
chr7 (9-44)||(15238412-15238447)
chr7 (9-46)||(4974735-4974772)
chr7 (9-46)||(15577850-15577887)
chr7 (9-46)||(40880792-40880829)
chr7 (9-46)||(42611839-42611876)
chr7 (9-46)||(42696289-42696326)
chr7 (9-46)||(45637740-45637777)
chr7 (10-46)||(36790467-36790503)
[»] chr1 (6 HSPs)
chr1 (9-59)||(10167415-10167465)
chr1 (9-46)||(16045798-16045835)
chr1 (9-46)||(18404470-18404507)
chr1 (9-46)||(40215016-40215053)
chr1 (9-46)||(44094726-44094763)
chr1 (9-46)||(44690844-44690881)
[»] chr6 (6 HSPs)
chr6 (9-44)||(11548588-11548623)
chr6 (9-55)||(29693469-29693515)
chr6 (9-46)||(9752245-9752282)
chr6 (9-46)||(33695327-33695364)
chr6 (9-46)||(33696724-33696761)
chr6 (10-46)||(18889698-18889734)
[»] scaffold0228 (3 HSPs)
scaffold0228 (9-46)||(8430-8467)
scaffold0228 (9-46)||(16012-16049)
scaffold0228 (9-46)||(25964-26001)
[»] scaffold0085 (1 HSPs)
scaffold0085 (9-46)||(47878-47915)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-46)||(85454-85491)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 37335778 - 37335419
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctcctaacctattaccaacactcacttatcatattaccaaaccagcaattta 108  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37335778 gattattctgccatgtcattcttgaatctttcttaatatatagcattgctcctaacctattaccaacactcacttatcatattaccaaaccagcaattta 37335679  T
Q  109 tgcttcatcgagcaaaaacataaaatcttctcccaataacattgtaatacatgctatttgtcttgaatcttaaccaatttcaagaaagtcattttaccga 208  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37335678 tgcttcatcgagtaaaaacagaaaatcttctcccaataacattgtaatacatgctatttgtcttgaatcttaaccaatttcaagaaagtcattttaccga 37335579  T
Q  209 ttcggtgatatttttcaggtgaacttccctgttattgaatagtttgatgttccttgccttccaaatgtttcaaatgccgacgaaccatatcacactatgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37335578 ttcggtgatatttttcaggtgaacttccctgttattgaatagtttgttgttccttgccttccaaatgttccaaatgccgacaaaccatatcacactatgt 37335479  T
Q  309 cgtctattaggaagactctcccactacccatcagcacttcaaatagatctaagtgggata 368  Q
    | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37335478 cttctattaggaagactctcccactacctatcagcccttcaaatagatctaagtgggata 37335419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 3989141 - 3989091
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||||| ||||||||||||| || ||||||||||||||| ||||||||    
T  3989141 gattattctgccatgtcattcttaaaattttcttgatatatagcattgctc 3989091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 21393688 - 21393723
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21393688 gattattctaccatgtcattcttaaatttttcttga 21393723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 43331118 - 43331155
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  43331118 gattattgtaccatgtcattcttgaatctttcttgata 43331155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 41883223 - 41883273
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  41883223 gattattctgccatgtcattcttgaatttttcttgatatatagcattgctc 41883273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 8362045 - 8362080
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8362045 gattattctgccatgtcattcttgaatttttcttga 8362080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 9797029 - 9797064
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9797029 gattattctgccatgtcattcttgaatttttcttga 9797064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 41224294 - 41224263
Alignment:
Q  13 attctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||||||||||||||||||||||||||    
T  41224294 attctaccatgtcattcttgaatttttcttga 41224263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3890616 - 3890662
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcatt 55  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  3890616 gattattctgccatgtcattcttgaatttttcttgatatatagcatt 3890662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 3817930 - 3817977
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattg 56  Q
    |||||||||  ||||| ||||||||||||||||||||||||| |||||    
T  3817930 gattattctgtcatgtaattcttgaatttttcttgatatatagcattg 3817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 31347782 - 31347817
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31347782 gattattctgccatgtcattcttgaatttttcttga 31347817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 15972877 - 15972927
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    |||||||||  |||||||||||| ||| |||||||||||||| ||||||||    
T  15972877 gattattctgtcatgtcattcttcaatctttcttgatatatagcattgctc 15972927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 7017865 - 7017898
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttctt 42  Q
    ||||||||| ||||||||||||||||||||||||    
T  7017865 gattattctgccatgtcattcttgaatttttctt 7017898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 20091801 - 20091838
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  20091801 gattattctgccatgtcattcttgaaattttcttgata 20091838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 27835453 - 27835486
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttctt 42  Q
    ||||||| ||||||||||||||||||||||||||    
T  27835453 gattattttaccatgtcattcttgaatttttctt 27835486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 32064810 - 32064773
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  32064810 gattattctgccatgtcattcttgaaattttcttgata 32064773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 34665447 - 34665410
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  34665447 gattattctgccatgtcattcttgaaattttcttgata 34665410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 37132658 - 37132695
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  37132658 gattattctgccatgtcattcttaaatttttcttgata 37132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 38017036 - 38016999
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  38017036 gattattctgccatgtcattcttgaaattttcttgata 38016999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42755042 - 42755079
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  42755042 gattattctgccatgtcattcttgaaattttcttgata 42755079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 3597042 - 3597082
Alignment:
Q  10 attattctaccatgtcattcttgaatttttcttgatatata 50  Q
    |||||||| ||||||||||||||||  ||||||||||||||    
T  3597042 attattctgccatgtcattcttgaaactttcttgatatata 3597082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 9088935 - 9088885
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  9088935 gattattctgccatgtcattcttgaaattttcttgatatatagcattgctc 9088885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 17655495 - 17655445
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| ||||||||    
T  17655495 gattattctgccatgtcattcttgaaattttcttaatatataacattgctc 17655445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 25063434 - 25063397
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25063434 gattattctaccatgtcattcttgaatctttcttgata 25063397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 33530688 - 33530725
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  33530688 gattattctgccatgtcattcttgaatttttcttgata 33530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 24392732 - 24392697
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24392732 gattattctgccatgtcattcttgaatttttcttga 24392697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 37219690 - 37219640
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||| |||||||||||| || ||| |||||| ||||||||||||||||    
T  37219690 gattattttaccatgtcatttttaaatatttcttaatatatatcattgctc 37219640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 10442789 - 10442826
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  10442789 gattattctgccatgtcattcttgaaattttcttgata 10442826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 21802322 - 21802359
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  21802322 gattattctgccatgtcattcttgaaattttcttgata 21802359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 22199326 - 22199289
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  22199326 gattattctgccatgtcattcttgaaattttcttgata 22199289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 31078819 - 31078856
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  31078819 gattattctgccatgtcattcttgaaattttcttgata 31078856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 47290272 - 47290305
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttctt 42  Q
    ||||||| ||||||||||||||||||||||||||    
T  47290272 gattattgtaccatgtcattcttgaatttttctt 47290305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 49387888 - 49387925
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  49387888 gattattctgccatgtcattcttgaaattttcttgata 49387925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 31640942 - 31640990
Alignment:
Q  11 ttattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  31640942 ttattctgccatgtcattcttgaatctttcttgatatatagcattgctc 31640990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 17545685 - 17545720
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17545685 gattattctgccatgtcattcttgaatttttcttga 17545720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 22913054 - 22913089
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22913054 gattattctgccatgtcattcttgaatttttcttga 22913089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 31640800 - 31640762
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatat 47  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  31640800 gattattctgccatgtcattcttgaatctttcttgatat 31640762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 6043511 - 6043548
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  6043511 gattattcttccatgtcattcttgaaattttcttgata 6043548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 8145440 - 8145403
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  8145440 gattattctgccatgtcattcttgaaattttcttgata 8145403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 10458462 - 10458425
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  10458462 gattattttgccatgtcattcttgaatttttcttgata 10458425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 30848634 - 30848584
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    ||||||||| ||||||||||||| || ||||||||||||||| ||||||||    
T  30848634 gattattctgccatgtcattcttaaaattttcttgatatatagcattgctc 30848584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 15238447 - 15238412
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  15238447 gattattctgccatgtcattcttgaatttttcttga 15238412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 4974735 - 4974772
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4974735 gattattctgccatgtcattcttgaaattttcttgata 4974772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 15577850 - 15577887
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  15577850 gattattctgccatgtcattcttgaaattttcttgata 15577887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 40880792 - 40880829
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  40880792 gattattctgccatgtcattcttgagtttttcttgata 40880829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 42611876 - 42611839
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  42611876 gattattctgccatgtcattcttgaaattttcttgata 42611839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42696289 - 42696326
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  42696289 gattattgtaccatgtcattcttgaattttttttgata 42696326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 45637777 - 45637740
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  45637777 gattattctgccatgtcattcttgaaattttcttgata 45637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 36790467 - 36790503
Alignment:
Q  10 attattctaccatgtcattcttgaatttttcttgata 46  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  36790467 attattctgccatgtcattcttaaatttttcttgata 36790503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 10167465 - 10167415
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcattgctc 59  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||||||    
T  10167465 gattattctatcatgtcattcttaaatctttcttgatatataacattgctc 10167415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 16045798 - 16045835
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  16045798 gattattctgccatgtcattcttgaaattttcttgata 16045835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 18404507 - 18404470
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||||||||||||||||| || |||||||||||    
T  18404507 gattattctaccatgtcattcttaaaattttcttgata 18404470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 40215053 - 40215016
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  40215053 gattattctgccatgtcattcttgaaattttcttgata 40215016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44094763 - 44094726
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  44094763 gattattctgccatgtcattcttgaaattttcttgata 44094726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44690881 - 44690844
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  44690881 gattattctgccatgtcattcttgaatctttcttgata 44690844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 11548588 - 11548623
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttga 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11548588 gattattctgccatgtcattcttgaatttttcttga 11548623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 29693515 - 29693469
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgatatatatcatt 55  Q
    |||||||||  |||||||||||||||| |||||||||||||| ||||    
T  29693515 gattattctgtcatgtcattcttgaatatttcttgatatatagcatt 29693469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 9752245 - 9752282
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  9752245 gattattctgccatatcattcttgaatttttcttgata 9752282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 33695327 - 33695364
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  33695327 gattattctgccatgtcattcttgaaattttcttgata 33695364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 33696761 - 33696724
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  33696761 gattattctgccatgtcattcttgaaattttcttgata 33696724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 18889698 - 18889734
Alignment:
Q  10 attattctaccatgtcattcttgaatttttcttgata 46  Q
    |||||||| |||||||||||||||| |||||||||||    
T  18889698 attattctgccatgtcattcttgaaattttcttgata 18889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 8467 - 8430
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  8467 gattattctgccatgtcattcttgaaattttcttgata 8430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 16049 - 16012
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  16049 gattattctgccatgtcattcttgaaattttcttgata 16012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 26001 - 25964
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  26001 gattattctgccatgtcattcttgaaattttcttgata 25964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 47915 - 47878
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  47915 gattattctgccatgtcattcttgaaattttcttgata 47878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 85491 - 85454
Alignment:
Q  9 gattattctaccatgtcattcttgaatttttcttgata 46  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  85491 gattattctgccatgtcattcttgagtttttcttgata 85454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University