View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_high_33 (Length: 362)
Name: NF17755_high_33
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 43226913 - 43226743
Alignment:
| Q |
1 |
aatagaaggaaaaatgattctaatcatattgcacttaataaaaaatgatttgaatcaaaatagaataaaagtgatttttaaagttctttaaaatactaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226913 |
aatagaaggaaaaatgattctaatcatattgcacttaataaaaaatgatttgaatcaaaatagaataaaagtgatttttaaagttctttaaaatactaac |
43226814 |
T |
|
| Q |
101 |
ttgtttcaagccactttccacctatagtttttatgcaatagaaatatttcaaagatcattatatgatatga |
171 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226813 |
ttgttccaagccactttccacctatagtttttatgcaatagaaatatttcaaagatcattatatgatatga |
43226743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 204 - 336
Target Start/End: Complemental strand, 43226735 - 43226603
Alignment:
| Q |
204 |
actaagaaaacataactcaaaacaacttagtctaattacataaacaaaggagacttttattgagcctgtgaaggctctgaagcatgtgaaccagaggctt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
43226735 |
actaagaaaacataactcaaaacaacttagtctaattacataaacaaaggagacttctattgagcctgtgaaggctctcaagcatgtgaactagaggctt |
43226636 |
T |
|
| Q |
304 |
caatgagtgatggagtcagaaaaaataattagg |
336 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||| |
|
|
| T |
43226635 |
caatcagtgacggggtcagaaaaaataattagg |
43226603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University