View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_35 (Length: 357)
Name: NF17755_high_35
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 1881356 - 1881006
Alignment:
| Q |
7 |
tcgaacaatatcctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgtt |
106 |
Q |
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| T |
1881356 |
tcgatcaatatcctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgtt |
1881257 |
T |
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| Q |
107 |
ttgtgggcaaaagagagaggatgtgacatagtaattcctgataattggacatgaaagttgctctttaggcacctaccatttgctaacaaacacctcgttg |
206 |
Q |
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| T |
1881256 |
ttgtgggcaaaagagagaggatgtgacatagtaattcctgataattggacatgaaagttgctctttaggcacctaccatttgctaacaaacacctcgttg |
1881157 |
T |
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| Q |
207 |
ctaacaatctcatagtccaatgagtagccgcaataaaaccaataagggtatcctcaactttatagtgataagtctatgaaattacaaatattttaatatc |
306 |
Q |
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| T |
1881156 |
ctaacaatctcatagtccaatgagtagccgcaataaaaccaataagggtatcctcaactttatagtgataagtctatgaaattacaaatattttaatatc |
1881057 |
T |
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| Q |
307 |
gaaatcgtaatatttaaacatcttattttttaaacaatcactcaacacgtt |
357 |
Q |
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| T |
1881056 |
gaaatcgtaatatttaaacatcttattttttaaacaatcactcaacacgtt |
1881006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 4140915 - 4140799
Alignment:
| Q |
18 |
cctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgttttgtgggcaaa |
117 |
Q |
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| T |
4140915 |
cctccatgtcgtccaagttgatatcgagaattctttgacggag--cagtctccagcgccttgagagaagggatgcaacgaagatttgttttgtaggcaaa |
4140818 |
T |
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| Q |
118 |
agagagaggatgtgacata |
136 |
Q |
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| T |
4140817 |
cgagacaggatgcgacata |
4140799 |
T |
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