View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_36 (Length: 355)
Name: NF17755_high_36
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 54423921 - 54423585
Alignment:
| Q |
17 |
ggaatccatgcgagaccttcggcctatttctctctgcaatgtattatacaagattgtctttatggtcctttccaatcgtctccctccactaattaacaaa |
116 |
Q |
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| T |
54423921 |
ggaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaaa |
54423822 |
T |
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| Q |
117 |
tggatttcccaagaacaaacagccttcatgcattctcactcaatcatggacaatgcgctaacatcattcaaagttctccatcatatgcgctacaaaacaa |
216 |
Q |
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| T |
54423821 |
tggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaa |
54423722 |
T |
|
| Q |
217 |
aaggaaaaataggagaggtgacactcaaacttaatatatccaaggcatttgatagtgtaagttagcagtacctcaaagcttttctacttaaaatgggttt |
316 |
Q |
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| T |
54423721 |
aagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggtt |
54423622 |
T |
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| Q |
317 |
catttcacagtggacctccaggatgatgatgtccatc |
353 |
Q |
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| T |
54423621 |
cagttcacagtggacttcctggatgatgatgtgcatc |
54423585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 145 - 353
Target Start/End: Original strand, 20127324 - 20127532
Alignment:
| Q |
145 |
tgcattctcactcaatcatggacaatgcgctaacatcattcaaagttctccatcatatgcgctacaaaacaaaaggaaaaataggagaggtgacactcaa |
244 |
Q |
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| T |
20127324 |
tgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggcactaaa |
20127423 |
T |
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| Q |
245 |
acttaatatatccaaggcatttgatagtgtaagttagcagtacctcaaagcttttctacttaaaatgggtttcatttcacagtggacctccaggatgatg |
344 |
Q |
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|||| |||||||||||||||||||||||||||||| || ||||||||| | |||| |||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
20127424 |
acttgatatatccaaggcatttgatagtgtaagttggccttacctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctggatgatg |
20127523 |
T |
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| Q |
345 |
atgtccatc |
353 |
Q |
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|||| |||| |
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| T |
20127524 |
atgtgcatc |
20127532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 20120926 - 20121052
Alignment:
| Q |
16 |
cggaatccatgcgagaccttcggcctatttctctctgcaatgtattatacaagattgtctttatggtcctttccaatcgtctccctccactaattaacaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| || ||||||| |||||||||||| |||| |||| ||||| |
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| T |
20120926 |
cggaatccatgcgagaccttcggcctatttctctctgtaatgtactgtacaagattgtctctaaggtccttgccaatcgtctccatccattaatcaacaa |
20121025 |
T |
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| Q |
116 |
atggatttcccaagaacaaacagcctt |
142 |
Q |
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| T |
20121026 |
atggatttcccaagaacaagcagcctt |
20121052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 27645698 - 27645619
Alignment:
| Q |
195 |
catcatatgcgctacaaaacaaaaggaaaaataggagaggtgacactcaaacttaatatatccaaggcatttgatagtgt |
274 |
Q |
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||||||||||||| |||||| ||||| ||||| || |||||| | || |||||| |||| || ||||| ||||||||||| |
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| T |
27645698 |
catcatatgcgctgcaaaaccaaaggtaaaattggtgaggtggctctgaaacttgatatctctaaggcttttgatagtgt |
27645619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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