View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_39 (Length: 343)
Name: NF17755_high_39
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 34460335 - 34460195
Alignment:
| Q |
195 |
aaccaattgaggtggcaagagtaaccacaaattttcagatcattgtaaacatacacaaatccaaaaatgccattctattaccaagccaaagatttccaaa |
294 |
Q |
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| T |
34460335 |
aaccaattgaggtggcaagagtaaccacaaattttcagatcattgtaaacagacacaaatccaaaaataccattctattatcaaaccaaatatttccacc |
34460236 |
T |
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| Q |
295 |
cccaacaaaaaccaatactttatttttattttcatattctt |
335 |
Q |
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| T |
34460235 |
accaaaaaaaaccaatattttatttttattttcatactctt |
34460195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 34460462 - 34460341
Alignment:
| Q |
22 |
ttactatatatgtcttgtgctnnnnnnnncataacttgctgctgctcttttggatttggattctcttcatttaaaatatgcattaattgatctcgatcga |
121 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34460462 |
ttactatatatgtcttgtgctaaaaaaaacataacttgctgctgctcttttggatttggattctcttcatttaaaatatgcattaattgatctccatcga |
34460363 |
T |
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| Q |
122 |
tcaggcggctcattgatttgag |
143 |
Q |
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|||||||||||||||||||||| |
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| T |
34460362 |
tcaggcggctcattgatttgag |
34460341 |
T |
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