View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_46 (Length: 298)
Name: NF17755_high_46
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 35636433 - 35636689
Alignment:
| Q |
16 |
ccttcttcttcgtcttgttccgttttataaaattttgtaatgatgttctattataagtaaaaattgaaacattttttaataaagattgattaagtggttg |
115 |
Q |
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| T |
35636433 |
ccttcttcttcgttttactccattttataaaattttgtaatgatgttcaattataagtaaaaattgaaacattttttaataaagattgattaagtggttg |
35636532 |
T |
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| Q |
116 |
agaaaagaacagcgtatatgatagtgtgatgatgttgaatgatgaaattgaaaaggagaccttcttctatggtgaaagac----ataaataaatagtgtt |
211 |
Q |
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| T |
35636533 |
ggaaaagaagagcgtacatgatagtgtgatgattttgaatgatgaaattgaaaaggagactttcttctatagtgaaagacataaataaataaatagagtt |
35636632 |
T |
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| Q |
212 |
caatcgtacgtatataaaaatgtttttcctcaaaatgctaaatcattttattattaa |
268 |
Q |
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| T |
35636633 |
caatcgcacatacataaaaatgttttttctcaaaatgctaaattattttattattaa |
35636689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 35631688 - 35631856
Alignment:
| Q |
16 |
ccttcttcttcgtcttgttccgttttataaaattttgtaatgatgttctattataagtaaaaattgaaacatttttt------------aataaagattg |
103 |
Q |
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| T |
35631688 |
ccttcatcttggtcttgttacgtttcttaaaattttgtaatgttgttcttttataagtaaaaattgaaacatttttttggtctcatcctaattaagattg |
35631787 |
T |
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| Q |
104 |
attaagtggttgagaaaagaacagcgtatatgatagtgtgatgatgttgaatgatgaaattgaaaaggag |
173 |
Q |
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| T |
35631788 |
attaagtggttgagaaatgaccagc-tacgtgatagtgtgatgatgatgaatgatgaaattgaaaaggag |
35631856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 28237985 - 28237945
Alignment:
| Q |
225 |
ataaaaatgtttttcctcaaaatgctaaatcattttattat |
265 |
Q |
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||||||| |||||| |||||||||||||||||||||||||| |
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| T |
28237985 |
ataaaaaagttttttctcaaaatgctaaatcattttattat |
28237945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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