View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_5 (Length: 652)

Name: NF17755_high_5
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_5
NF17755_high_5
[»] chr1 (1 HSPs)
chr1 (10-634)||(29071817-29072443)


Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 10 - 634
Target Start/End: Original strand, 29071817 - 29072443
Alignment:
Q  10 tccaagaatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtct 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29071817 tccaaaaatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtct 29071916  T
Q  110 tgccctcaccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29071917 tgccctcaccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctct 29072016  T
Q  210 aaaaagtttcatagatagacccttatcactcttagtagaat--gaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcacca 307  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29072017 aaaaagtttcatagatagacccttatcactcttagtagaatatgaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcaccg 29072116  T
Q  308 acttcttacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataattgttgccacatcgaaacgatgatagcttttagccaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072117 acttcttacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataattgttgccacatcgaaacgatgatagcttttagccaaaa 29072216  T
Q  408 tggttgtactccagctcagtagctctctaaccctaggccaagattctgatagcaaacaaacagtttctaattgtaaaaatagctatgaacaagggtcgct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072217 tggttgtactccagctcagtagctctctaaccctaggccaagattctgatagcaaacaaacagtttctaattgtaaaaatagctatgaacaagggtcgct 29072316  T
Q  508 tttcatcaattgtctgatattgtcgatttttgttttaagaacaaatttaggttgaggttttccttttatatttaaaaatatgataaaatcaaacaatggc 607  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072317 tttcatcaaatgtctgatattgtcgatttttgttttaagaacaaatttaggttgaggttttccttttatatttaaaaatatgataaaatcaaacaatggc 29072416  T
Q  608 attcacattaatctatttgagcacact 634  Q
    |||||||||||||||||||||||||||    
T  29072417 attcacattaatctatttgagcacact 29072443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University