View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_52 (Length: 263)
Name: NF17755_high_52
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 33750677 - 33750434
Alignment:
| Q |
5 |
ttctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750677 |
ttctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcc |
33750578 |
T |
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| Q |
105 |
cacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750577 |
cacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaat |
33750478 |
T |
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| Q |
205 |
ttcagcagcccatttaccccatggtctttgtctcactcctctgt |
248 |
Q |
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| T |
33750477 |
ttcagcagcccatttaccccatggtctttgtctcactcctctgt |
33750434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 33719153 - 33718963
Alignment:
| Q |
56 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg |
155 |
Q |
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| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg |
33719054 |
T |
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| Q |
156 |
tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
246 |
Q |
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| T |
33719053 |
tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 33735824 - 33735634
Alignment:
| Q |
58 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg |
157 |
Q |
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| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg |
33735725 |
T |
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| Q |
158 |
gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
248 |
Q |
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| T |
33735724 |
gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgt |
33735634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 248
Target Start/End: Complemental strand, 33721171 - 33720980
Alignment:
| Q |
57 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt |
156 |
Q |
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| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt |
33721072 |
T |
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| Q |
157 |
ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
248 |
Q |
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| T |
33721071 |
ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgt |
33720980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
| Q |
194 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
246 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct |
6583050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
| Q |
194 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
246 |
Q |
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| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct |
6568891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 13409921 - 13409876
Alignment:
| Q |
203 |
atttcagcagcccatttaccccatggtctttgtctcactcctctgt |
248 |
Q |
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| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcctctgt |
13409876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 44331866 - 44331914
Alignment:
| Q |
200 |
cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
248 |
Q |
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|||||||| || |||||||| ||||||||||| ||||| |||||||||| |
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| T |
44331866 |
cgaatttctgctgcccattttccccatggtctctgtcttactcctctgt |
44331914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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