View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_54 (Length: 262)
Name: NF17755_high_54
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39842015 - 39841769
Alignment:
| Q |
1 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataatcatgtaaacaagaaccaaatgagca |
100 |
Q |
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||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39842015 |
aagaacctcacttaccagctgcaagagaatgcctttgtacctgaacaaaacaagcgcaattaaaagacccataattatgtaaacaagaaccaaatgagca |
39841916 |
T |
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| Q |
101 |
tctatgctaaatcatataaatcatatagaaggctctccaagaatgaaggtaaaggttatatagactgaattgacagaactggaaatacaaaaaattatga |
200 |
Q |
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| T |
39841915 |
tatatgctaaatcatataaatcatatagaaggctctccaagaatcaaggtaaaggttatatagactgaattgacagaactggaaatacaaaaaattatga |
39841816 |
T |
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| Q |
201 |
aaagaagaaaag---atagatatttttgttaggagttagctaacatc |
244 |
Q |
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| T |
39841815 |
aaagaagaaaagcaaatagatatttttgttaggagttagctaacatc |
39841769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 35163875 - 35163639
Alignment:
| Q |
1 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataatcatgtaaacaagaaccaaatgagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
35163875 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcagttaaaagacccataattatgtaaacaagaaccaaatgagca |
35163776 |
T |
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| Q |
101 |
tctatgctaaatcatataaatcatatagaaggctctccaagaatgaaggtaaaggttatatagactgaattgacagaactggaaatacaaaaaattatga |
200 |
Q |
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| T |
35163775 |
tatatgctaaatcatataaatcatatagaaggctctccaag-----------aggttatatagactgaattgacagaactggaaatacaaaaaattatga |
35163687 |
T |
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| Q |
201 |
aaagaagaaaag---atagatatttttgttaggagttagctaacatct |
245 |
Q |
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| T |
35163686 |
aaagaagaaaagcaaatagatatttttgttaggagttagctaacatct |
35163639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44796308 - 44796543
Alignment:
| Q |
1 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataatcatgtaaacaagaaccaaatgagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
44796308 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcagttaaaagacccataattatgtaaacaagaaccaaatgagca |
44796407 |
T |
|
| Q |
101 |
tctatgctaaatcatataaatcatatagaaggctctccaagaatgaaggtaaaggttatatagactgaattgacagaactggaaatacaaaaaattatga |
200 |
Q |
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| T |
44796408 |
tatatgctaaatcatataaatcatatagaaggttctccaag-----------aggttatatagacagaattgacagaactggaaatacaaaaaattatga |
44796496 |
T |
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| Q |
201 |
aaagaagaaaag---atagatatttttgttaggagttagctaacatc |
244 |
Q |
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| T |
44796497 |
aaagaagaaaagcaaatagatatttttgttaggagttagctaacatc |
44796543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39847058 - 39846822
Alignment:
| Q |
1 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataatcatgtaaacaagaaccaaatgagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39847058 |
aagaacctcacttaccagctgcatgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataattatgtaaacaagaaccaaatgagca |
39846959 |
T |
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| Q |
101 |
tctatgctaaatcatataaatcatatagaaggctctccaagaatgaaggtaaaggttatatagactgaattgacagaactggaaatacaaaaaattatga |
200 |
Q |
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| T |
39846958 |
tatctgctaaatca---------tatagaaggctctccaagaatcaaggtaaaggttataaagactgaattgacagaactggaaatacaaaaaattatga |
39846868 |
T |
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| Q |
201 |
aaagaagaaaag---atagatatttttgttaggagttagctaacatc |
244 |
Q |
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| T |
39846867 |
aaagaagaaaagcaaatagata-ttttgttaggagttagctaacatc |
39846822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 31696507 - 31696599
Alignment:
| Q |
24 |
tgagagtgccattgtacctgaacaaaacaagcgcaattaaaagacccataatcatgtaaacaagaaccaaatgagcatctatgctaaatcatata |
118 |
Q |
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|||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| | || || | ||||||||||| |
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| T |
31696507 |
tgagagtgccatcatacctgaacaaaacaagc--aatcaaaagacccataattatgtaaacaagaaccaaatgggaatatacggtaaatcatata |
31696599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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