View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_6 (Length: 648)

Name: NF17755_high_6
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_6
NF17755_high_6
[»] chr6 (14 HSPs)
chr6 (1-633)||(24213198-24213851)
chr6 (349-629)||(24210124-24210417)
chr6 (1-108)||(13390674-13390781)
chr6 (5-108)||(4110845-4110948)
chr6 (8-108)||(8401427-8401528)
chr6 (1-118)||(32833777-32833894)
chr6 (1-108)||(1096503-1096609)
chr6 (1-108)||(17545890-17545996)
chr6 (4-118)||(2259194-2259307)
chr6 (4-108)||(26358565-26358669)
chr6 (123-202)||(24209933-24210012)
chr6 (1-98)||(24487308-24487406)
chr6 (1-118)||(6848795-6848917)
chr6 (4-65)||(2565016-2565077)
[»] chr1 (27 HSPs)
chr1 (1-108)||(8461540-8461647)
chr1 (1-108)||(46770744-46770851)
chr1 (1-108)||(18642155-18642262)
chr1 (1-108)||(39971282-39971389)
chr1 (1-108)||(45423901-45424008)
chr1 (1-108)||(51520100-51520207)
chr1 (1-108)||(23459562-23459669)
chr1 (1-108)||(39190576-39190683)
chr1 (1-118)||(23056986-23057104)
chr1 (1-118)||(23061287-23061405)
chr1 (1-118)||(51985221-51985338)
chr1 (1-108)||(38262147-38262253)
chr1 (1-108)||(45673603-45673710)
chr1 (1-102)||(6520005-6520107)
chr1 (1-98)||(50905865-50905962)
chr1 (1-108)||(51369603-51369711)
chr1 (1-108)||(37499029-37499135)
chr1 (1-118)||(5956529-5956647)
chr1 (1-118)||(35305437-35305555)
chr1 (1-102)||(52303299-52303400)
chr1 (1-108)||(28494057-28494163)
chr1 (1-108)||(921855-921962)
chr1 (1-104)||(43306819-43306921)
chr1 (1-98)||(26102496-26102593)
chr1 (1-78)||(29106408-29106484)
chr1 (6-65)||(16482867-16482926)
chr1 (42-118)||(50239280-50239356)
[»] chr7 (16 HSPs)
chr7 (1-109)||(30863079-30863187)
chr7 (1-108)||(38129398-38129505)
chr7 (1-108)||(30623733-30623840)
chr7 (1-108)||(41913109-41913215)
chr7 (1-118)||(28327352-28327470)
chr7 (10-119)||(1690995-1691104)
chr7 (1-118)||(42711216-42711332)
chr7 (1-91)||(3910216-3910307)
chr7 (4-119)||(41381771-41381887)
chr7 (4-108)||(40942165-40942269)
chr7 (1-108)||(21699305-21699412)
chr7 (22-108)||(27956591-27956678)
chr7 (48-118)||(45461660-45461730)
chr7 (1-118)||(30936097-30936213)
chr7 (1-34)||(45458852-45458885)
chr7 (1-108)||(45857488-45857594)
[»] chr8 (23 HSPs)
chr8 (1-108)||(14498317-14498424)
chr8 (1-118)||(946255-946374)
chr8 (1-108)||(29229189-29229297)
chr8 (1-118)||(15725893-15726010)
chr8 (1-108)||(38502477-38502583)
chr8 (1-118)||(29459920-29460038)
chr8 (1-108)||(10280846-10280953)
chr8 (1-118)||(34332398-34332514)
chr8 (1-104)||(12162957-12163061)
chr8 (1-104)||(12407385-12407489)
chr8 (1-118)||(37511374-37511492)
chr8 (1-118)||(28090477-28090593)
chr8 (1-118)||(29773731-29773847)
chr8 (1-118)||(44935185-44935301)
chr8 (1-107)||(23274909-23275016)
chr8 (1-80)||(37161794-37161873)
chr8 (1-98)||(36002645-36002742)
chr8 (1-100)||(39171103-39171201)
chr8 (1-118)||(23286851-23286968)
chr8 (3-80)||(23275078-23275155)
chr8 (18-118)||(39171001-39171103)
chr8 (1-118)||(17642360-17642476)
chr8 (1-119)||(2273296-2273413)
[»] chr3 (23 HSPs)
chr3 (1-108)||(40650357-40650464)
chr3 (1-108)||(46959838-46959945)
chr3 (1-108)||(35171204-35171311)
chr3 (1-108)||(47948405-47948512)
chr3 (1-118)||(42067864-42067982)
chr3 (1-107)||(42848204-42848310)
chr3 (1-118)||(42363931-42364048)
chr3 (1-118)||(29786536-29786654)
chr3 (1-118)||(876225-876342)
chr3 (1-98)||(31309165-31309262)
chr3 (1-118)||(38785085-38785202)
chr3 (1-118)||(11140532-11140648)
chr3 (4-108)||(44365898-44366002)
chr3 (11-108)||(378616-378712)
chr3 (1-118)||(44670262-44670378)
chr3 (1-73)||(45636374-45636447)
chr3 (4-59)||(4660044-4660099)
chr3 (43-118)||(29347314-29347389)
chr3 (4-45)||(37492206-37492247)
chr3 (46-118)||(39629951-39630023)
chr3 (1-118)||(52082046-52082162)
chr3 (60-118)||(37492241-37492299)
chr3 (4-65)||(39678396-39678457)
[»] chr5 (23 HSPs)
chr5 (1-118)||(32467329-32467446)
chr5 (1-108)||(3056682-3056789)
chr5 (1-108)||(18228473-18228580)
chr5 (1-118)||(34302934-34303051)
chr5 (1-108)||(2414210-2414317)
chr5 (1-108)||(9535153-9535260)
chr5 (1-108)||(43237368-43237475)
chr5 (1-119)||(6561112-6561230)
chr5 (1-110)||(6532866-6532975)
chr5 (1-108)||(1661705-1661812)
chr5 (5-108)||(36338858-36338961)
chr5 (1-118)||(13410827-13410945)
chr5 (1-108)||(2141528-2141635)
chr5 (1-118)||(24098156-24098273)
chr5 (1-98)||(21605935-21606033)
chr5 (1-90)||(6318317-6318406)
chr5 (1-80)||(2029639-2029718)
chr5 (1-80)||(6113814-6113894)
chr5 (1-108)||(42917404-42917511)
chr5 (1-64)||(22780799-22780862)
chr5 (1-118)||(14967518-14967634)
chr5 (1-118)||(13091200-13091316)
chr5 (1-117)||(9589495-9589610)
[»] chr2 (16 HSPs)
chr2 (1-118)||(14532827-14532944)
chr2 (1-118)||(3383194-3383312)
chr2 (1-118)||(37083496-37083614)
chr2 (1-108)||(42427581-42427688)
chr2 (1-108)||(4673614-4673722)
chr2 (1-108)||(11813205-11813313)
chr2 (1-108)||(15771322-15771429)
chr2 (4-107)||(33423048-33423151)
chr2 (1-118)||(59204-59322)
chr2 (1-106)||(3810465-3810570)
chr2 (1-118)||(5389205-5389321)
chr2 (1-118)||(11227914-11228030)
chr2 (1-118)||(34665857-34665973)
chr2 (1-118)||(1353793-1353909)
chr2 (8-98)||(6884454-6884545)
chr2 (1-107)||(38963081-38963188)
[»] chr4 (27 HSPs)
chr4 (4-118)||(47302269-47302383)
chr4 (1-108)||(33075992-33076100)
chr4 (4-108)||(34280237-34280341)
chr4 (1-98)||(3716611-3716708)
chr4 (1-118)||(37518968-37519085)
chr4 (1-118)||(37523184-37523301)
chr4 (4-108)||(43137384-43137488)
chr4 (8-118)||(30343120-30343231)
chr4 (1-108)||(30539846-30539953)
chr4 (1-118)||(38836136-38836253)
chr4 (1-108)||(46041987-46042094)
chr4 (1-108)||(55722764-55722870)
chr4 (1-118)||(48578910-48579026)
chr4 (1-118)||(52592079-52592196)
chr4 (1-108)||(51435825-51435933)
chr4 (1-118)||(41759662-41759778)
chr4 (1-118)||(11109599-11109718)
chr4 (1-108)||(27539203-27539310)
chr4 (1-80)||(14802998-14803078)
chr4 (1-108)||(52589358-52589465)
chr4 (1-98)||(37855407-37855505)
chr4 (1-118)||(28037971-28038088)
chr4 (1-100)||(53388867-53388966)
chr4 (4-118)||(31908732-31908845)
chr4 (1-118)||(9858536-9858652)
chr4 (1-118)||(36091345-36091461)
chr4 (28-68)||(43147803-43147843)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-118)||(48296-48412)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-80)||(36649-36729)
[»] scaffold0283 (1 HSPs)
scaffold0283 (4-118)||(6528-6641)


Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 24213198 - 24213851
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  24213198 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgaaagtaccgatataccgtaatttgc 24213297  T
Q  101 gggtgtacaggagaagtt---------------------tgatcaatactatgcctataattttattgttagatccatttcaaagcattaatgaattctc 179  Q
    |||||||| | |||| ||                     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213298 gggtgtaccgtagaaattccctaatttaaattgaaaaattgagcaatactatgcctataattttattgttagatccatttcaaagcattaatgaattctc 24213397  T
Q  180 tttcaatacttaaaaaggataggaacgtacatatattattggaccataacgagtggtgagcctaaagtagatagatttaaatcaattaaaggttattgtc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213398 tttcaatacttaaaaaggataggaacgtacatatattattggaccacaacgagtggtgagcctaaagtagatagatttaaatcaattaaaggttattgtc 24213497  T
Q  280 ggttatcaatgatttttgaagggacaattatcgacgtgttcacatgcaccttcgttgattctcttcatgttttctttcccttaatatattattacacgca 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213498 ggttatcaatgatttttgaagggacaattatcgacgtgttcacatgcaccttcgttgattctcttcatgttttctttcccttaatatattattacacgca 24213597  T
Q  380 tgcatgatctatcttctactcaacaaagcacaaacacacatatcctcactttcattagagtcatagccaccatggccttagaaaccaaaccacgccttcc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213598 tgcatgatctatcttctactcaacaaagcacaaacacacatatcctcactttcattagagtcatagccaccatggccttagaaaccaaaccacgccttcc 24213697  T
Q  480 atggaaggtgcgcttctctacttccatcctctccgccattagcgacatcaccggtcgttccaatggtaccattaatcgccgcctcctcagcttcattgac 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213698 atggaaggtgcgcttctctacttccatcctctccgccattagcgacatcaccggtcgttccaatggtaccattaatcgccgcctcctcagcttcattgac 24213797  T
Q  580 tggaaaatgcctcctaaccctaattccaaatccatcaacggcgtctcttcatct 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24213798 tggaaaatgcctcctaaccctaattccaaatccatcaacggcgtctcttcatct 24213851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 349 - 629
Target Start/End: Original strand, 24210124 - 24210417
Alignment:
Q  349 ttttctttcccttaatatattattacacgcatgcatgatctatcttctactcaacaaagcacaaacacacata--------tcctc--------actttc 432  Q
    ||||||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||| ||||||||||         | |||        |||||     
T  24210124 ttttctttcccttaatatatta---cacacatgcatgatctctcttctactcaacaaagcaaaaacacacatcctcactctttctcccttttcaacttta 24210220  T
Q  433 attagagtcatagccaccatggccttagaaaccaaaccacgccttccatggaaggtgcgcttctctacttccatcctctccgccattagcgacatcaccg 532  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24210221 attagagtcatagccaccatggcttcagaaaccaaaccacaccttccatggaaggtgcgcttctctacttccatcctctccgccataagcgatatcaccg 24210320  T
Q  533 gtcgttccaatggtaccattaatcgccgcctcctcagcttcattgactggaaaatgcctcctaaccctaattccaaatccatcaacggcgtctcttc 629  Q
    || |||||||||| ||||||||  |||  ||||| ||||||||||||| ||||||| |  | ||||||| |||||||||||||| || |||||||||    
T  24210321 gtggttccaatggcaccattaactgccatctccttagcttcattgactagaaaatgtcatccaaccctagttccaaatccatcatcgacgtctcttc 24210417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13390674 - 13390781
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |    
T  13390674 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttac 13390773  T
Q  101 gggtgtac 108  Q
     |||||||    
T  13390774 aggtgtac 13390781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 4110845 - 4110948
Alignment:
Q  5 aaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||||||| |||||    
T  4110845 aaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagaaccggtacaccgtaatttacgggt 4110944  T
Q  105 gtac 108  Q
    ||||    
T  4110945 gtac 4110948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 8401528 - 8401427
Alignment:
Q  8 atatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgt 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  8401528 atatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtacaccgtaatttgcgggtgt 8401429  T
Q  107 ac 108  Q
    ||    
T  8401428 ac 8401427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 32833894 - 32833777
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||    
T  32833894 ttctaaaatatatatgtcaatagacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccagtacaccgtaatttgc 32833795  T
Q  101 gggtgtacaggagaagtt 118  Q
    || ||||| | |||||||    
T  32833794 ggatgtaccgtagaagtt 32833777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1096503 - 1096609
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||| |||||| ||| ||||||||||||| |    
T  1096503 ttctaaaatatatatgtcaacaaacacctattttcctcataaaaatt-atagttaatttataaaaattataagcgagagtaccggtacaccgtaatttac 1096601  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  1096602 gggtgtac 1096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17545890 - 17545996
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||  |||||| ||||||||    
T  17545890 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccagtacaccttaatttgc 17545988  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  17545989 gggtgtac 17545996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 2259194 - 2259307
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||  |||||| |||||||||||    
T  2259194 taaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtacctgtacaccttaatttgcggg 2259292  T
Q  104 tgtacaggagaagtt 118  Q
    ||||| | |||||||    
T  2259293 tgtaccgtagaagtt 2259307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 26358669 - 26358565
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| | | |||||| |||||| |||     
T  26358669 taaaatatatatgtcaacaaacacgtattttcttcataaaaaatgatagttaatttataaaaattataagcgagagtactggtacaccataatttacggt 26358570  T
Q  104 tgtac 108  Q
    |||||    
T  26358569 tgtac 26358565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 24209933 - 24210012
Alignment:
Q  123 caatactatgcctataattttattgttagatccatttcaaagcattaatgaattctctttcaatacttaaaaaggatagg 202  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24209933 caatactatgcctataatttaattgttagattcatttcaaagcattcatgaattctctttcaatacttaaaaaggatagg 24210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24487406 - 24487308
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| ||||||    
T  24487406 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacaccttaattt 24487308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6848795 - 6848917
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttc------ataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgta 94  Q
    |||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||    
T  6848795 ttctaaaatatatatgtcaacaaacacctattttttttttttttataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacacctta 6848893  T
Q  95 atttgcgggtgtacaggagaagtt 118  Q
    |||| ||||||||| | |||||||    
T  6848894 atttacgggtgtaccgtagaagtt 6848917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 2565016 - 2565077
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaa 65  Q
    ||||||||| || | |||||| | ||||||  ||||||||||||||| ||||||||||||||    
T  2565016 taaaatataaatattaacaaataactatttatttcataaaaaatgatcgttaatttataaaa 2565077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8461647 - 8461540
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  8461647 ttctaaaatatatatgtcaacaaacaccaattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgc 8461548  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  8461547 gggtgtac 8461540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46770851 - 46770744
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |    
T  46770851 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttac 46770752  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  46770751 gggtgtac 46770744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18642155 - 18642262
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |    
T  18642155 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttac 18642254  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  18642255 gggtgtac 18642262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39971389 - 39971282
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |    
T  39971389 ttctaaaatatatatgtcaacaaaaacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttac 39971290  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  39971289 gggtgtac 39971282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45423901 - 45424008
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |    
T  45423901 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacatcgtaatttac 45424000  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  45424001 gggtgtac 45424008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 51520100 - 51520207
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||| |    
T  51520100 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgaaagtgagagtaccggtaccccgtaatttac 51520199  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  51520200 gggtgtac 51520207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23459669 - 23459562
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | | ||||||||||||| |    
T  23459669 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattataagcgagagtactggtacaccgtaatttac 23459570  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  23459569 gggtgtac 23459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39190683 - 39190576
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| |    
T  39190683 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttac 39190584  T
Q  101 gggtgtac 108  Q
     |||||||    
T  39190583 tggtgtac 39190576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23056986 - 23057104
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||| |||||| |||||||    
T  23056986 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacaccttaatttg 23057085  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||||||||| | |||||||    
T  23057086 cgggtgtaccgtagaagtt 23057104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23061287 - 23061405
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  23061287 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgataattaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 23061386  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||||||||| | |||||||    
T  23061387 cgggtgtaccgtagaagtt 23061405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 51985221 - 51985338
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  51985221 ttctaaaatatatttgtcaacaaacacctattttcttcataaagaattatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttgc 51985320  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  51985321 aggtgtaccgtagaagtt 51985338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 38262253 - 38262147
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| | |    
T  38262253 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgataattaatttataaaaattgtaagcgagag-tacgatacaccgtaatctac 38262155  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  38262154 gggtgtac 38262147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45673603 - 45673710
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |    
T  45673603 ttctaaaatatatttgtcaacaaacacctattttcttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacaccgtaatttac 45673702  T
Q  101 gggtgtac 108  Q
    || |||||    
T  45673703 ggatgtac 45673710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6520107 - 6520005
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  6520107 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 6520008  T
Q  100 cgg 102  Q
    |||    
T  6520007 cgg 6520005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 50905865 - 50905962
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  50905865 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatatttaatttataaaaattgtaagcgagagtaccggtacaccgtaattt 50905962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 51369603 - 51369711
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  51369603 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaataatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 51369702  T
Q  100 cgggtgtac 108  Q
    | |||||||    
T  51369703 caggtgtac 51369711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 37499029 - 37499135
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  37499029 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 37499127  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  37499128 gggtgtac 37499135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5956647 - 5956529
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| |||| | |||||||    
T  5956647 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacagcttaatttg 5956548  T
Q  100 cgggtgtacaggagaagtt 118  Q
     |||||||| | |||||||    
T  5956547 tgggtgtaccgtagaagtt 5956529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 35305437 - 35305555
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||     
T  35305437 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaattta 35305536  T
Q  100 cgggtgtacaggagaagtt 118  Q
    || |||||| | |||||||    
T  35305537 cgagtgtaccgtagaagtt 35305555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 52303299 - 52303400
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttc-ttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||    
T  52303299 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaa-tgtaagtgagagtaccggtacaccttaatttg 52303397  T
Q  100 cgg 102  Q
    |||    
T  52303398 cgg 52303400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28494057 - 28494163
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||  ||||| ||| |||||| ||||||||    
T  28494057 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcaagagtaccggtacaccttaatttgc 28494155  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  28494156 gggtgtac 28494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 921962 - 921855
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| ||| |||||| |||||||    
T  921962 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaa-cgagagtaccggtacaccttaatttg 921864  T
Q  100 cgggtgtac 108  Q
    | |||||||    
T  921863 caggtgtac 921855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43306819 - 43306921
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||||||| |    
T  43306819 ttctaaaatatatatgtcaacaaacgcctattttcttcat-aaaaattatagttaatttataaaaattgtaaacgagagtaccggtacaccgtaatttac 43306917  T
Q  101 gggt 104  Q
    ||||    
T  43306918 gggt 43306921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26102593 - 26102496
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |  || |||||||||||||    
T  26102593 ttctaaaatatatatgtcaagaaacacctattttcttcataaaaaattatagttaatttataaaaatcgtaaatgagaatatcggtacaccgtaattt 26102496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29106484 - 29106408
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgaga 78  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  29106484 ttctaaaatatacatatcaacaaacacatattttcttcataaaaaat-atagttaatttataaaaattgtaagcgaga 29106408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 16482867 - 16482926
Alignment:
Q  6 aaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaa 65  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16482867 aaatctatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaa 16482926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 50239356 - 50239280
Alignment:
Q  42 aaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggagaagtt 118  Q
    |||||||||||||||||||||||  ||  |||| ||||| ||| |||||| |||||||||||||||| | |||||||    
T  50239356 aaaaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 50239280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 30863079 - 30863187
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |    
T  30863079 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttac 30863178  T
Q  101 gggtgtaca 109  Q
    |||||||||    
T  30863179 gggtgtaca 30863187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 38129505 - 38129398
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| | ||| ||||||||||||| |    
T  38129505 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagcaagaataccggtacaccgtaatttac 38129406  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  38129405 gggtgtac 38129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 30623840 - 30623733
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||||      
T  30623840 ttctaaaatatatatgtcaacaaacacttattttctttataaaaaatgatagttaatttataaaaattgtaagcgagagtatcggtacaccgtaatttat 30623741  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  30623740 gggtgtac 30623733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41913215 - 41913109
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  41913215 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 41913117  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  41913116 gggtgtac 41913109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28327352 - 28327470
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||  ||| |||| | |||||||    
T  28327352 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacagcttaatttg 28327451  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||||||||| | |||||||    
T  28327452 cgggtgtaccgtagaagtt 28327470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 1691104 - 1690995
Alignment:
Q  10 atatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| || ||| |||||| |||||||||     
T  1691104 atatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttaaaaaaattgtaaatgagagtaccggtataccataatttacgggtgtacg 1691005  T
Q  110 ggagaagttt 119  Q
    | ||||||||    
T  1691004 gtagaagttt 1690995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 42711216 - 42711332
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  42711216 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 42711314  T
Q  101 gggtgtacaggagaagtt 118  Q
    || ||||| | |||||||    
T  42711315 ggatgtaccgtagaagtt 42711332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3910216 - 3910307
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacacc 91  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  3910216 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacacc 3910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 41381771 - 41381887
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgg 102  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||  | ||| ||| | |||  |||||| |||    
T  41381771 taaaatatatatgtcaacaaagacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcaaaagtaccggtgcacattaatttacgg 41381870  T
Q  103 gtgtacaggagaagttt 119  Q
    |||||| | ||||||||    
T  41381871 gtgtaccgtagaagttt 41381887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 40942165 - 40942269
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgg 102  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||| |||||| ||| |||| | |||||| |||    
T  40942165 taaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacatcttaatttacgg 40942263  T
Q  103 gtgtac 108  Q
     |||||    
T  40942264 atgtac 40942269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21699412 - 21699305
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataa-aaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||| |||||  ||||||  || |||||| |||||||    
T  21699412 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgataattaatttataaaaa-tgtaaacgagagtatcggtacaccttaatttg 21699314  T
Q  100 cgggtgtac 108  Q
    || ||||||    
T  21699313 cgagtgtac 21699305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 27956591 - 27956678
Alignment:
Q  22 aaacacctattttcttc-ataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtac 108  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| ||||||| |||||| ||| |||||| ||||||||||||||||    
T  27956591 aaacacctattttcttttacaaaaaatgatagttaatttataaaatttgtaagcgagagtaccggtacaccttaatttgcgggtgtac 27956678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 45461660 - 45461730
Alignment:
Q  48 gatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggagaagtt 118  Q
    ||||||||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||||| | |||||||    
T  45461660 gatagttaaattataaaaattgtaagcgagagtaccggtacaccgtaatttgcaggtgtaccgtagaagtt 45461730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30936213 - 30936097
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  |||||||||  ||||||||||||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  30936213 ttctaaaatataaatatcaacaaatagctttttatttcataaaat-tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgc 30936115  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  30936114 gggtgtaccgtagaagtt 30936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 45458852 - 45458885
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctatttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45458852 ttctaaaatatatatgtcaacaaacacctatttt 45458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 45857594 - 45857488
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  |||||||||  | ||||||||||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  45857594 ttctaaaatataaatatcaacaaatagctttttatttcataaaag-taatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgc 45857496  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  45857495 gggtgtac 45857488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 14498424 - 14498317
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |    
T  14498424 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttac 14498325  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  14498324 gggtgtac 14498317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 946255 - 946374
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaa--aatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  946255 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 946354  T
Q  99 gcgggtgtacaggagaagtt 118  Q
    |||||||||| | |||||||    
T  946355 gcgggtgtaccgtagaagtt 946374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29229297 - 29229189
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||     
T  29229297 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaagtgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaattta 29229198  T
Q  100 cgggtgtac 108  Q
    |||||||||    
T  29229197 cgggtgtac 29229189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15726010 - 15725893
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  || |||||||||||||||    
T  15726010 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattgtaagcgagagtatcggtacaccgtaatttgc 15725911  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  15725910 aggtgtaccgtagaagtt 15725893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38502477 - 38502583
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||| |    
T  38502477 ttctaaaatatatatgtcaacaaacacctattttcttcataaaa-atgatagttaatttataaaaattgtaagcgagaataccgatacaccgtaatttac 38502575  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  38502576 gggtgtac 38502583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29459920 - 29460038
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  29459920 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 29460019  T
Q  100 cgggtgtacaggagaagtt 118  Q
    | ||||||| | |||||||    
T  29460020 caggtgtaccgtagaagtt 29460038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10280846 - 10280953
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||  |||||| ||||||||||||||||  |    
T  10280846 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgataattaatttataaaaattataaacgagagtaccgatacaccgtaattcac 10280945  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  10280946 gggtgtac 10280953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34332398 - 34332514
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  34332398 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 34332496  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  34332497 gggtgtaccgtagaagtt 34332514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12163061 - 12162957
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  12163061 ttctaaaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacactgtaatttg 12162962  T
Q  100 cgggt 104  Q
    |||||    
T  12162961 cgggt 12162957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12407489 - 12407385
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  12407489 ttctaaaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacactgtaatttg 12407390  T
Q  100 cgggt 104  Q
    |||||    
T  12407389 cgggt 12407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 37511374 - 37511492
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttca-taaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||     
T  37511374 ttctaaaatatatatgtcaacaaacaccaattttctttaataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaattta 37511473  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||| ||||| | |||||||    
T  37511474 cggatgtaccgtagaagtt 37511492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28090477 - 28090593
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||| ||||    
T  28090477 ttctaaaatatatatgtcaacaaacatctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaaattgc 28090575  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  28090576 gggtgtaccgtagaagtt 28090593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29773731 - 29773847
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| || ||| ||| |||||| ||| ||||    
T  29773731 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgaaagtaccggtacaccttaaattgc 29773829  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  29773830 gggtgtaccgtagaagtt 29773847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44935185 - 44935301
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||  |||||| ||| |||||| ||| ||||    
T  44935185 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaaccgagagtaccggtacaccttaaattgc 44935283  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  44935284 gggtgtaccgtagaagtt 44935301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23274909 - 23275016
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagt-tccgatacaccgtaatttg 99  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  ||| |||||| |||||||    
T  23274909 ttctaaaatgcatatgtcaaaaaacacctattttcttcataaaaaataatagttaatttataaaaattgtaagcgagagtacccggtacaccttaatttg 23275008  T
Q  100 cgggtgta 107  Q
    ||||||||    
T  23275009 cgggtgta 23275016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37161794 - 37161873
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  37161794 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattataagcgagagt 37161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 36002645 - 36002742
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| | ||  |||||||||||    
T  36002645 ttctaaaatagatatgtcaacaaacacctattttcttcataaaaaataatagttaatttataaaaattgtaaacgagagtactgaagcaccgtaattt 36002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39171201 - 39171103
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| |||||| |||||| | | |||||| ||||||||    
T  39171201 ttctaaaatatatatgtcaacaaacacctatttcttttataaaaaatgatagttaatttataaaaa-tgtaagcgagagtactggtacaccttaatttgc 39171103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23286851 - 23286968
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||| |||| |||||| |||||  ||||||||||| ||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||    
T  23286851 ttctaaaatatatatttcaataaacacttatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttg 23286949  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||||||||| | |||||||    
T  23286950 cgggtgtaccgtagaagtt 23286968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 23275078 - 23275155
Alignment:
Q  3 ctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    |||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  23275078 ctaaaatgcatatgtcaaaaaacacctattttcttcataaaaaataatagttaatttataaaaattgtaagcgagagt 23275155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 39171103 - 39171001
Alignment:
Q  18 caacaaacacctattttcttcataaaaaatgatagt---taatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggaga 114  Q
    ||||||||||||||||  ||||||||||||||||||   |||||||||||||| ||||| |||||| ||| |||||| |||||||||||||||| | |||    
T  39171103 caacaaacacctatttctttcataaaaaatgatagtagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggtgtaccgtaga 39171005  T
Q  115 agtt 118  Q
    ||||    
T  39171004 agtt 39171001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17642360 - 17642476
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  ||||||||| |||||||||||||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  17642360 ttctaaaatataaatatcaacaaatagctttttatttcataaaa-atgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgc 17642458  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  17642459 gggtgtaccgtagaagtt 17642476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2273296 - 2273413
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||| | || |||||||| | || |||  |||||||||| ||| ||||||||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  2273296 ttctaaaatacaaatatcaacaaatagctttttatttcataaaaa-tgacagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgc 2273394  T
Q  101 gggtgtacaggagaagttt 119  Q
     ||||||| | ||||||||    
T  2273395 aggtgtaccgtagaagttt 2273413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 40650357 - 40650464
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |    
T  40650357 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccgatacaccgtaatttac 40650456  T
Q  101 gggtgtac 108  Q
    | ||||||    
T  40650457 gagtgtac 40650464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46959838 - 46959945
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  46959838 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaagttgtaagcgagagtaccgatacaccgtaatttgc 46959937  T
Q  101 gggtgtac 108  Q
     |||||||    
T  46959938 aggtgtac 46959945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35171311 - 35171204
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| |    
T  35171311 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttac 35171212  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  35171211 gggtgtac 35171204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47948512 - 47948405
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||| |    
T  47948512 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtcatttac 47948413  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  47948412 gggtgtac 47948405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 42067864 - 42067982
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  42067864 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 42067963  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||||||||| | |||||||    
T  42067964 cgggtgtaccgtagaagtt 42067982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 42848310 - 42848204
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||| |||| |    
T  42848310 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgggagtaccggtacaccgtcatttac 42848211  T
Q  101 gggtgta 107  Q
    |||||||    
T  42848210 gggtgta 42848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42364048 - 42363931
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||  ||||| |||||||||||||||||||    
T  42364048 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaattatagttaaattataaaaattgtaagctagagtaccgatacaccgtaatttgc 42363949  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  42363948 aggtgtaccgtagaagtt 42363931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29786654 - 29786536
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  29786654 ttctaaaatatatatgtcaacaaacacttattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 29786555  T
Q  100 cgggtgtacaggagaagtt 118  Q
    | ||||||| | |||||||    
T  29786554 caggtgtaccgtagaagtt 29786536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 876342 - 876225
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||  |||| ||||||||||    
T  876342 ttctaaaatatatatgtcaacaaacaactattttcttcataaaaaatgatagttaaattataaaaattataagcgagagtaccagtacatcgtaatttgc 876243  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  876242 gggtgtaccgtagaagtt 876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31309165 - 31309262
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||| |||||||||||||    
T  31309165 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattgtaaccgagagtaccggtacaccgtaattt 31309262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 38785202 - 38785085
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttat-aaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| ||| ||||||||||||||    
T  38785202 ttctaaaatatatatgtcaacaaacacctattttcttcata-aaaattatagttaatttataaaaaattgtaagcgagagtaccggtacaccgtaatttg 38785104  T
Q  100 cgggtgtacaggagaagtt 118  Q
    | ||||||| | |||||||    
T  38785103 caggtgtaccgtagaagtt 38785085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11140532 - 11140648
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||  |||||||||| |||||| |||||| ||| |||||| ||||||||    
T  11140532 ttctaaaatatatatgtcaacaaacacctatttcttttataaaaaatgatagtttgtttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 11140630  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  11140631 gggtgtaccgtagaagtt 11140648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 44365898 - 44366002
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgg 102  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||| |||||| ||| |||||| |||||| |||    
T  44365898 taaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttacgg 44365996  T
Q  103 gtgtac 108  Q
    ||||||    
T  44365997 gtgtac 44366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 378712 - 378616
Alignment:
Q  11 tatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtac 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||  || ||| ||||| ||||||| |||||||||    
T  378712 tatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaatt-aaagtgatggtaccggtacactgtaatttacgggtgtac 378616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44670378 - 44670262
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| |||||| || ||| |||  ||||| |||||| |    
T  44670378 ttctaaaatatatatgtcaacaaacacttatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgaaagtaccggcacaccttaatttac 44670280  T
Q  101 gggtgtacaggagaagtt 118  Q
    || ||||| | |||||||    
T  44670279 ggatgtaccgtagaagtt 44670262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45636374 - 45636447
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaag 73  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  45636374 ttctaaaatatatatgtcaacaaatacctattttctttcataaaaaatgatagttaatttataaaaattataag 45636447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 4660044 - 4660099
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaattt 59  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4660044 taaaatatatatgtcaacaaacagctatttttttcataaaaaatgatagttaattt 4660099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 29347389 - 29347314
Alignment:
Q  43 aaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggagaagtt 118  Q
    ||||||||||||||||||||||||||||||| |||||| ||| ||||| | ||||||||||||||| | |||||||    
T  29347389 aaaatgatagttaatttataaaaattgtaagcgagagtaccggtacactgcaatttgcgggtgtaccgtagaagtt 29347314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 37492206 - 37492247
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaa 45  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37492206 taaaatatatatgtcaacaaacacctattttcttcataaaaa 37492247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 39630023 - 39629951
Alignment:
Q  46 atgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggagaagtt 118  Q
    |||||||||||||||||||||||||||| || ||| ||| |||| | |||||||||| ||||| | |||||||    
T  39630023 atgatagttaatttataaaaattgtaagcgatagtaccggtacatcttaatttgcggatgtaccgtagaagtt 39629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 52082162 - 52082046
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  |||||||||| | |||||| |||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  52082162 ttctaaaatataaatatcaacaaataactttttatttcataaaaa-taatagttcatttataaatttttgaagtaagagtaccggtacaccttaatttgc 52082064  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  52082063 gggtgtaccgtagaagtt 52082046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 37492241 - 37492299
Alignment:
Q  60 ataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgtacaggagaagtt 118  Q
    ||||||||| |||| |||||| ||| ||||||||||||||||| ||||| | |||||||    
T  37492241 ataaaaattataagcgagagtaccggtacaccgtaatttgcggatgtaccgtagaagtt 37492299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 39678396 - 39678457
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaa 65  Q
    ||||||||| || | |||||| | ||||||  ||||||||||||||| ||||||||||||||    
T  39678396 taaaatataaatattaacaaatagctatttatttcataaaaaatgatcgttaatttataaaa 39678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 32467329 - 32467446
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||    
T  32467329 ttctgaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgcaagcgagagtaccggtacaccgtaatttgc 32467428  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  32467429 gggtgtaccgtagaagtt 32467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3056682 - 3056789
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |    
T  3056682 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttac 3056781  T
Q  101 gggtgtac 108  Q
    | ||||||    
T  3056782 gagtgtac 3056789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18228580 - 18228473
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |    
T  18228580 ttctaaaatatatatgtcaacaaacacgtattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttac 18228481  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  18228480 gggtgtac 18228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34302934 - 34303051
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  34302934 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaattatagttaatttataaaaattataagtgagagtaccggtacaccgtaatttgc 34303033  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  34303034 aggtgtaccgtagaagtt 34303051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 2414210 - 2414317
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |    
T  2414210 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccgttacactgtaatttac 2414309  T
Q  101 gggtgtac 108  Q
    || |||||    
T  2414310 ggatgtac 2414317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9535153 - 9535260
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||| |    
T  9535153 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagtaccgttacactttaatttac 9535252  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  9535253 gggtgtac 9535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 43237475 - 43237368
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  43237475 ttctaaaatatatatgtcaaccaacacctattttcttcataaaaaattataattaatttataaaaattgtaagcgagagtaccgatacaccgtaatttgc 43237376  T
Q  101 gggtgtac 108  Q
     |||||||    
T  43237375 aggtgtac 43237368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6561112 - 6561230
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| | ||| |||||||||||||||    
T  6561112 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattgtaagcaagaataccggtacaccgtaatttgc 6561211  T
Q  101 gggtgtacaggagaagttt 119  Q
     ||||||| | ||||||||    
T  6561212 aggtgtaccgtagaagttt 6561230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6532866 - 6532975
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||    
T  6532866 ttctaaaatatatatgttaacaaacacctattttcttcataaaacatgatagttaaattataaaaattgtaagcgagagtatcgatacaccgtaatttgc 6532965  T
Q  101 gggtgtacag 110  Q
    || |||||||    
T  6532966 ggatgtacag 6532975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1661812 - 1661705
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||||||| |    
T  1661812 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatgatagttaatttataaaaattgtaagcgagagcaccggtacaccgtaatttac 1661713  T
Q  101 gggtgtac 108  Q
     |||||||    
T  1661712 aggtgtac 1661705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 36338961 - 36338858
Alignment:
Q  5 aaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggt 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||| |||||    
T  36338961 aaaatatacatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtactggtacaccgtaatttacgggt 36338862  T
Q  105 gtac 108  Q
    ||||    
T  36338861 gtac 36338858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13410827 - 13410945
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  13410827 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 13410926  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||| ||||| | |||||||    
T  13410927 cggatgtaccgtagaagtt 13410945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 2141528 - 2141635
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||||      
T  2141528 ttctaaaatatatatatcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaacggtacaccgtaatttat 2141627  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  2141628 gggtgtac 2141635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 24098156 - 24098273
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||| |||||| ||  |||||||||||||||    
T  24098156 ttctaaaatatatatgtcaacaaagacttattttcttcataaaaaatgatattttatttataaaaattgtaagcgagagtaccagtacaccgtaatttgc 24098255  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  24098256 aggtgtactgtagaagtt 24098273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21605935 - 21606033
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| ||||||    
T  21605935 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacaccttaattt 21606033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6318406 - 6318317
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacac 90  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||| |||||    
T  6318406 ttctaaaatatatatgtcaacaaatacctattttcttcgtaaaaaattatagttaatttataaaaattgtaagcgagagtaccgctacac 6318317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2029639 - 2029718
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  2029639 ttctaaaatatataagtcaacaaacacctattttcttcataaaaaatgacagttaaattataaaaattgtaagcgagagt 2029718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6113894 - 6113814
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  6113894 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattataagcgagagt 6113814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 42917404 - 42917511
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||| |||||| ||| |||||| |||||||    
T  42917404 ttctaaaatatatatttcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttg 42917502  T
Q  100 cgggtgtac 108  Q
     ||||||||    
T  42917503 tgggtgtac 42917511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22780799 - 22780862
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaa 64  Q
    ||||||| |||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  22780799 ttctaaactataaatgtcaacaaacaactatttttttcacaaaaaatgatagttaatttataaa 22780862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14967518 - 14967634
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  ||||||||| |||||||||||||||||||  ||  |||| ||||| |||||||||| ||||||||    
T  14967518 ttctaaaatatagatatcaacaaatagctttttatttcataaaa-atgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgc 14967616  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  14967617 aggtgtaccgtagaagtt 14967634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13091200 - 13091316
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  ||||||||| |||||||||||||||||||  ||  |||| ||||| ||| |||||| |||||| |    
T  13091200 ttctaaaatataaatatcaacaaatagctttttatttcataaaa-atgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttac 13091298  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  13091299 gggtgtaccgtagaagtt 13091316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9589495 - 9589610
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||| |||| || |||||||| | || |||  ||||||||| |||||||||||||||||||  ||  |||| ||||| |||||||||| |||||||     
T  9589495 ttctaaagtataaatatcaacaaatagctttttatttcataaaa-atgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgt 9589593  T
Q  101 gggtgtacaggagaagt 117  Q
    || ||||| | ||||||    
T  9589594 ggatgtaccgtagaagt 9589610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 14532944 - 14532827
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||    
T  14532944 ttctaaaatatatatgttaacaaacacctattttcttcataaaaaatgatagttaaattataaaaattgtaagcgagagtatcgatacaccgtaatttgc 14532845  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  14532844 gggtgtaccgtagaagtt 14532827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 3383312 - 3383194
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||     
T  3383312 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaattta 3383213  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||| ||||| | |||||||    
T  3383212 cggatgtaccgtagaagtt 3383194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 37083496 - 37083614
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  37083496 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccgatacaccttaatttg 37083595  T
Q  100 cgggtgtacaggagaagtt 118  Q
    ||| ||||| | |||||||    
T  37083596 cggatgtaccgtagaagtt 37083614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 42427688 - 42427581
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||||||||||||| |    
T  42427688 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcaagagtatcggtacaccgtaatttac 42427589  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  42427588 gggtgtac 42427581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4673722 - 4673614
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  4673722 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 4673623  T
Q  100 cgggtgtac 108  Q
    | |||||||    
T  4673622 caggtgtac 4673614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 11813313 - 11813205
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||    
T  11813313 ttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttg 11813214  T
Q  100 cgggtgtac 108  Q
     ||||||||    
T  11813213 tgggtgtac 11813205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15771429 - 15771322
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||| |||||| |||||| |    
T  15771429 ttctaaaatatatatgtcaacaaacacttattttctttataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacaccttaatttac 15771330  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  15771329 gggtgtac 15771322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 33423151 - 33423048
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||     
T  33423151 taaaatatatatgtcaacaaacagctatttttttcattaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttgcgga 33423052  T
Q  104 tgta 107  Q
    ||||    
T  33423051 tgta 33423048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 59204 - 59322
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgt-aatttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||| | | ||||||    
T  59204 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattgtaagcgagagtaccggtacatcataaatttg 59303  T
Q  100 cgggtgtacaggagaagtt 118  Q
    | ||||||| | |||||||    
T  59304 caggtgtaccgtagaagtt 59322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 3810570 - 3810465
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||| |||||| |||||||     
T  3810570 ttctaaaatatatatgtcaaaaaacacctattttcttcataaaaaataatagttaatttataaaaattgtaagcgaaagtaccggtacaccttaatttgt 3810471  T
Q  101 gggtgt 106  Q
    ||||||    
T  3810470 gggtgt 3810465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5389321 - 5389205
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  5389321 ttctaaaatatatatgtcaacaaacacatatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtgccggtacaccttaatttgc 5389223  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  5389222 gggtgtaccgtagaagtt 5389205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11227914 - 11228030
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| | |||||||| ||||||||    
T  11227914 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtactgatacaccttaatttgc 11228012  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  11228013 aggtgtaccgtagaagtt 11228030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34665857 - 34665973
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  34665857 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaataatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 34665955  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  34665956 gggtgtaccgtagaagtt 34665973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1353793 - 1353909
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| |||||| |||||| | | |||||| ||||||||    
T  1353793 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaattatagttaatttataaaaa-tgtaagcgagagtactggtacaccttaatttgc 1353891  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  1353892 gggtgtaccgtagaagtt 1353909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 6884454 - 6884545
Alignment:
Q  8 atatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  6884454 atatatatatcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaattt 6884545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 38963188 - 38963081
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcat--aaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||||||||||||||||||||||||||  || ||  |||||||||||||||||||||||||| |||||| |||||| ||| | |||| ||||||    
T  38963188 ttctaaaatatatatgtcaacaaacacctatttcttttataaaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtgcaccttaattt 38963090  T
Q  99 gcgggtgta 107  Q
    || ||||||    
T  38963089 gcaggtgta 38963081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 47302269 - 47302383
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| ||||    
T  47302269 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttacggg 47302368  T
Q  104 tgtacaggagaagtt 118  Q
    ||||| | |||||||    
T  47302369 tgtaccgtagaagtt 47302383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33076100 - 33075992
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||     
T  33076100 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaattta 33076001  T
Q  100 cgggtgtac 108  Q
    |||||||||    
T  33076000 cgggtgtac 33075992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 34280341 - 34280237
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||| ||||    
T  34280341 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgcaatttacggg 34280242  T
Q  104 tgtac 108  Q
    |||||    
T  34280241 tgtac 34280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3716611 - 3716708
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  3716611 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaattt 3716708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 37519085 - 37518968
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||||| |    
T  37519085 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtactgatatactgtaatttac 37518986  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  37518985 gggtgtaccgtagaagtt 37518968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 37523301 - 37523184
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||||| |    
T  37523301 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgatagttaatttataaaaattgtaagcgagagtactgatatactgtaatttac 37523202  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  37523201 gggtgtaccgtagaagtt 37523184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 43137488 - 43137384
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||    
T  43137488 taaaatatatatgtcaacaaacacctattttctttacaaaaaatgatagttaatttattaaaattgtaagtgagagtaccgatacaccgtaattcacggg 43137389  T
Q  104 tgtac 108  Q
    |||||    
T  43137388 tgtac 43137384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 30343120 - 30343231
Alignment:
Q  8 atatatatgtcaacaaacacctattttcttcataaaa-aatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcgggtgt 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
T  30343120 atatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtaaaccgtaatttgcgggtgt 30343219  T
Q  107 acaggagaagtt 118  Q
    || | |||||||    
T  30343220 accgtagaagtt 30343231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30539846 - 30539953
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||  ||||||||||||| |    
T  30539846 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatgatagttaatttataaaaattataagcgagagtaccagtacaccgtaatttac 30539945  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  30539946 gggtgtac 30539953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 38836136 - 38836253
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||| ||||||| |||||| |||||||||||||||||||    
T  38836136 ttctaaaatatatatgtcaacaaacacctatttttttcataaaaaattataattaatttacaaaagttgtaagcgagagtaccgatacaccgtaatttgc 38836235  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  38836236 aggtgtaccgtagaagtt 38836253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46041987 - 46042094
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||| |||| |||||||  |    
T  46041987 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattataaacgagagtaccggtacatcgtaattcac 46042086  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  46042087 gggtgtac 46042094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 55722764 - 55722870
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||||||||    
T  55722764 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttgc 55722862  T
Q  101 gggtgtac 108  Q
    ||||||||    
T  55722863 gggtgtac 55722870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 48579026 - 48578910
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| |||||| |    
T  48579026 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttac 48578928  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  48578927 gggtgtaccgtagaagtt 48578910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 52592079 - 52592196
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| | |||||| ||| ||||||||||||| |    
T  52592079 ttctaaaatatatatgtcaacaaacacttattttcttcataaaaaatgataattactttataaaaattgtatgcgagagtaccggtacaccgtaatttac 52592178  T
Q  101 gggtgtacaggagaagtt 118  Q
    || ||||| | |||||||    
T  52592179 ggatgtaccgtagaagtt 52592196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 51435933 - 51435825
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||    
T  51435933 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttaaaaaaaatgtaaatgagagttccggtacaccttaatttg 51435834  T
Q  100 cgggtgtac 108  Q
    |||||||||    
T  51435833 cgggtgtac 51435825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41759778 - 41759662
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||  |||||| |    
T  41759778 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacactttaatttac 41759680  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  41759679 gggtgtaccgtagaagtt 41759662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11109718 - 11109599
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaa-tgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||| |||| |||||| ||| |||||| ||||||    
T  11109718 ttctaaaatatatatgtcaacaaacatcaattttctttcataaaaaaatgatagttaatttataaaaattttaagcgagagtaccggtacaccttaattt 11109619  T
Q  99 gcgggtgtacaggagaagtt 118  Q
    |||||||||| | |||||||    
T  11109618 gcgggtgtaccgtagaagtt 11109599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27539203 - 27539310
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||| ||| |||||| |||||| |    
T  27539203 ttctaaaatatatatatcaacaaacacctattttcttcataaaaaattatagttaatttataaaaattataagcaagagtaccggtacaccataatttac 27539302  T
Q  101 gggtgtac 108  Q
    || |||||    
T  27539303 ggatgtac 27539310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14802998 - 14803078
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  14802998 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagt 14803078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 52589358 - 52589465
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||   |||||  || ||||||||||||| |    
T  52589358 ttctaaaatatatatgtcaataaacacctattttcttcataaaaaattatagttaatttataaaaattataaacaagagtatcggtacaccgtaatttac 52589457  T
Q  101 gggtgtac 108  Q
    | ||||||    
T  52589458 gagtgtac 52589465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37855407 - 37855505
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaattt 98  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||| || ||| |||||| ||||||    
T  37855407 ttctaaaatatatatgtcaacaaacacttattttctttcataaaaaatgacagttaatttataaaaattgtaagcgagggtaccggtacaccttaattt 37855505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28037971 - 28038088
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    ||||||||||||||| |||||||| ||||||||  ||||| |||||||||||||||||||||||||| |||||| |||||| ||| |||||| |||||||    
T  28037971 ttctaaaatatatatttcaacaaaaacctatttctttcataaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaatttg 28038069  T
Q  100 cgggtgtacaggagaagtt 118  Q
     |||||||| | |||||||    
T  28038070 tgggtgtaccgtagaagtt 28038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 53388966 - 53388867
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataa-aaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttg 99  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||  |||||| ||| |||||| |||||||    
T  53388966 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatggttaatttataaaaa-tgtaaacgagagtaccggtacaccttaatttg 53388868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 31908732 - 31908845
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    ||||||||| || |||||||| | || |||  |||||||||  ||||||||||||||||||  ||  |||| ||||| ||| |||||| |||||||||||    
T  31908732 taaaatataaatatcaacaaatagctttttatttcataaaat-tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcggg 31908830  T
Q  104 tgtacaggagaagtt 118  Q
    ||||| | |||||||    
T  31908831 tgtaccgtagaagtt 31908845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9858536 - 9858652
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||| || |||||||| | || |||  |||||||||| | ||||||||||||||||  ||  |||| ||||| ||| |||||| ||||||||    
T  9858536 ttctaaaatataaatatcaacaaatagctttttatttcataaaaa-taatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgc 9858634  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  9858635 aggtgtaccgtagaagtt 9858652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 36091345 - 36091461
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||| | || |||||||| | || |||  ||||||||| |||||||||||||||||||  ||  |||| ||||| ||| |||||| |||||| |    
T  36091345 ttctaaaatacaaatatcaacaaatagctttttatttcataaaa-atgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttac 36091443  T
Q  101 gggtgtacaggagaagtt 118  Q
     ||||||| | |||||||    
T  36091444 aggtgtaccgtagaagtt 36091461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 43147803 - 43147843
Alignment:
Q  28 ctattttcttcataaaaaatgatagttaatttataaaaatt 68  Q
    |||||| || ||||||||||||| |||||||||||||||||    
T  43147803 ctatttactacataaaaaatgatcgttaatttataaaaatt 43147843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 48296 - 48412
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||| ||| ||||    
T  48296 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacaccttaaattgc 48394  T
Q  101 gggtgtacaggagaagtt 118  Q
    |||||||| | |||||||    
T  48395 gggtgtaccgtagaagtt 48412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36729 - 36649
Alignment:
Q  1 ttctaaaatatatatgtcaacaaacacctattttctt-cataaaaaatgatagttaatttataaaaattgtaagtgagagt 80  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  36729 ttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagt 36649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 6528 - 6641
Alignment:
Q  4 taaaatatatatgtcaacaaacacctattttcttcataaaaaatgatagttaatttataaaaattgtaagtgagagttccgatacaccgtaatttgcggg 103  Q
    ||||||||||||||||||||||||||||||   ||||||  |||| ||  | ||||||||||| |||||  |||||| ||| |||||| ||| |||||||    
T  6528 taaaatatatatgtcaacaaacacctatttctgtcataaggaatggtaagtgatttataaaaa-tgtaaccgagagtaccggtacaccttaaattgcggg 6626  T
Q  104 tgtacaggagaagtt 118  Q
    ||||| | |||||||    
T  6627 tgtaccgtagaagtt 6641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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