View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_62 (Length: 243)

Name: NF17755_high_62
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_62
NF17755_high_62
[»] chr1 (4 HSPs)
chr1 (69-233)||(35636707-35636877)
chr1 (8-45)||(19830386-19830423)
chr1 (8-45)||(26434710-26434747)
chr1 (8-45)||(36139367-36139404)
[»] chr3 (5 HSPs)
chr3 (1-45)||(39708011-39708055)
chr3 (8-43)||(30200689-30200724)
chr3 (1-43)||(14904445-14904487)
chr3 (8-45)||(2205538-2205575)
chr3 (8-45)||(47722150-47722187)
[»] chr6 (2 HSPs)
chr6 (8-43)||(13439880-13439915)
chr6 (1-43)||(9126643-9126685)
[»] chr5 (1 HSPs)
chr5 (8-43)||(34606376-34606411)
[»] chr2 (5 HSPs)
chr2 (8-43)||(9714871-9714906)
chr2 (8-45)||(1374799-1374836)
chr2 (8-45)||(8519267-8519304)
chr2 (8-45)||(39431170-39431207)
chr2 (8-44)||(3414875-3414911)
[»] chr8 (2 HSPs)
chr8 (1-43)||(7318903-7318945)
chr8 (1-45)||(45022599-45022643)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 35636707 - 35636877
Alignment:
Q  69 aatcttttaatgcgtgccctaacactagtcattt------atatttgcgactatattattagaattccttttgaaaaggagtgaaattaccagccgagat 162  Q
    |||||||||||| |||||||||||||||||||||      ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35636707 aatcttttaatgtgtgccctaacactagtcatttatatttatatttgtgactatattattagaactccttttgaaaaggagtgaaattaccagccgagat 35636806  T
Q  163 tgacaataaatttagttgtaatttgtaataatctctatgtagttcaaagctcaacaacatgcagagagaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35636807 tgacaataaatttagttgtaatttgtaataatctctatgtagttcaaagctcaacaacatgcagagagaat 35636877  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 19830386 - 19830423
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  19830386 acttttggaaagataggagtccaaaagtgcaattaaac 19830423  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 26434747 - 26434710
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  26434747 acttttggaaagataggggttcaaaagtgcaattaaac 26434710  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 36139404 - 36139367
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  36139404 acttttggaaagataggggttcaaaagtgcaattaaac 36139367  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39708055 - 39708011
Alignment:
Q  1 taattgcacttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||    
T  39708055 taattgcacttttggaaagataggggtcgaaaagtgcaattaaac 39708011  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 30200689 - 30200724
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaa 43  Q
    |||||||||||||||||||| |||||||||||||||    
T  30200689 acttttggaaagataggagtctaaaagtgcaattaa 30200724  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14904487 - 14904445
Alignment:
Q  1 taattgcacttttggaaagataggagtttaaaagtgcaattaa 43  Q
    |||||||||||||||||||||||| ||  ||||||||||||||    
T  14904487 taattgcacttttggaaagataggggtccaaaagtgcaattaa 14904445  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 2205575 - 2205538
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  2205575 acttttggaaagataggggttcaaaagtgcaattaaac 2205538  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 47722187 - 47722150
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  47722187 acttttggaaagataggggttcaaaagtgcaattaaac 47722150  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 13439915 - 13439880
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaa 43  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13439915 acttttggaaagataggagttcaaaagtgcaattaa 13439880  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9126643 - 9126685
Alignment:
Q  1 taattgcacttttggaaagataggagtttaaaagtgcaattaa 43  Q
    |||||||||||||||||||||||| ||  ||||||||||||||    
T  9126643 taattgcacttttggaaagataggggtccaaaagtgcaattaa 9126685  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 34606411 - 34606376
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaa 43  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34606411 acttttggaaagataggggtttaaaagtgcaattaa 34606376  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 9714906 - 9714871
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaa 43  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9714906 acttttggaaagataggagttcaaaagtgcaattaa 9714871  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 1374836 - 1374799
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| || |||||||||||||||||    
T  1374836 acttttggaaagataggggtctaaaagtgcaattaaac 1374799  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 8519304 - 8519267
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  8519304 acttttggaaagataggggttcaaaagtgcaattaaac 8519267  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 39431207 - 39431170
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  39431207 acttttggaaagatagaagttcaaaagtgcaattaaac 39431170  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 3414875 - 3414911
Alignment:
Q  8 acttttggaaagataggagtttaaaagtgcaattaaa 44  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  3414875 acttttggaaagataggggttcaaaagtgcaattaaa 3414911  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7318903 - 7318945
Alignment:
Q  1 taattgcacttttggaaagataggagtttaaaagtgcaattaa 43  Q
    |||||||||||||||||||||||| ||  ||||||||||||||    
T  7318903 taattgcacttttggaaagataggggtccaaaagtgcaattaa 7318945  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45022599 - 45022643
Alignment:
Q  1 taattgcacttttggaaagataggagtttaaaagtgcaattaaac 45  Q
    |||||||||||||||||||||||| ||  ||||| ||||||||||    
T  45022599 taattgcacttttggaaagataggggtccaaaagggcaattaaac 45022643  T

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