View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_high_65 (Length: 238)
Name: NF17755_high_65
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_65 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 23939429 - 23939226
Alignment:
| Q |
18 |
ttcttctattatatgtgtatttctatggttcaaaagctctacattattttaacagtcaagttatgcttgatggtttactactaaaattttcgtaggcaac |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23939429 |
ttcttctattatgtgtgtatttctatggttcaaaagctctacattattttaacattcaagttatgcttgatggtttactactaaaattttcgtaggcaac |
23939330 |
T |
|
| Q |
118 |
tgaggttttgatcgagtatcgtttcgcttcaatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagaccttacatatattctgt |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23939329 |
tgaggttttgatcgagtatcgtttcacttcaatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagacaatacatatattctgt |
23939230 |
T |
|
| Q |
218 |
cttt |
221 |
Q |
| |
|
|||| |
|
|
| T |
23939229 |
cttt |
23939226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 24003529 - 24003418
Alignment:
| Q |
102 |
aattttcgtaggcaactgaggttttgatcgagtatcgtttcgcttcaatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagac |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| | ||| ||||| || |||||||||||| |||||||| |
|
|
| T |
24003529 |
aattttcgtaggcaactgaggttttga-cgagtatcgtttcacttcaatcgcaagaatttcaaactgta-ttaacaatgcaaggtcatttcaggttagac |
24003432 |
T |
|
| Q |
202 |
cttacatatattct |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24003431 |
aatacatatattct |
24003418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 24003687 - 24003638
Alignment:
| Q |
45 |
gttcaaaagctctacattattttaacagtcaagttatgcttgatggttta |
94 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
24003687 |
gttcaaaagctctgcattattttaacattcaagttatgtttgatggttta |
24003638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 3576798 - 3576750
Alignment:
| Q |
45 |
gttcaaaagctctacattattttaacagtcaagttatgcttgatggttt |
93 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
3576798 |
gttcaaaagctttacattagtttaacaaccaagttatgcttgattgttt |
3576750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University