View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_79 (Length: 208)
Name: NF17755_high_79
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_79 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 3e-99; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 30007361 - 30007551
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30007361 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
30007460 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30007461 |
catgggctattgggagagattgtaacgtttggtcagaaaatgctgatgaattttacccagagagatttattgacaagaaaatgaattatca |
30007551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29953813 - 29954003
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
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||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
29953813 |
ctttaccctgttgcacccttattactccctcgtgaatgtagagagagtgtaacaattgatggatattttataaaggaaaagactcgagttatagtaaatg |
29953912 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatca |
191 |
Q |
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|||||||||| |||||||||| || |||||||||| |||||| || |||||| ||||||||||||| |||| |||||||||||||||||| |
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| T |
29953913 |
catgggctatagggagagattcaaatgtttggtcagaaaatgccgaagaattttacccagagagattcattggcaagaaaatgaattatca |
29954003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29965081 - 29965271
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
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||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
29965081 |
ctttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatg |
29965180 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatca |
191 |
Q |
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|||||||||| |||||||||| || |||||| || ||| |||||||| ||| | ||||||||||||| ||| ||||||||||||||||| |
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| T |
29965181 |
catgggctatagggagagattcaaatatttggttagaaaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatca |
29965271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 30009717 - 30009527
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
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||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
30009717 |
ctttaccctgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatg |
30009618 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatca |
191 |
Q |
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|
|||||||||| |||||||||| || |||||| || ||| |||||||| ||| | ||||||||||||| ||| ||||||||||||||||| |
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| T |
30009617 |
catgggctatagggagagattcaaatatttggttagaaaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatca |
30009527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 30001245 - 30001434
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||| |||||||||||||||| |
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| T |
30001245 |
ctttatcctgttgcacctttattaatccctcgtgaatgtagagagaacataacaattgatgattattctataaaagaaaagacacgagttatagtaaatg |
30001344 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatc |
190 |
Q |
| |
|
||||||| |||||||||||| | | |||||||||| ||||||||| |||||| ||||||||||||||||||| || ||||||||||||| |
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|
| T |
30001345 |
catgggcaattgggagagatcctgatgtttggtcagaaaatgctgaagaattttacccagagagatttattgagaaaaaaatgaattatc |
30001434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29946852 - 29947040
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
29946852 |
ctttaccctgttgcacccttgttactccctcgtgaatgtagagagagtataacaattgatggatattttataatggaaaagacacgagttatagtaaatg |
29946951 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattat |
189 |
Q |
| |
|
|||||||||| | |||||||| || |||||||||| |||| ||| |||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
29946952 |
catgggctatagagagagattctagtgtttggtcagaaaattatgaagaatttcatccagaaagatttattgacatgaaaatgaattat |
29947040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 30068151 - 30067964
Alignment:
| Q |
4 |
tatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatgcat |
103 |
Q |
| |
|
|||||||||| ||||||| || |||||| | |||||||||||| |||||||||||||| |||||||||| | ||||||| || |||| |||||||||| |
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|
| T |
30068151 |
tatcctgttgcacccttactagtccctcctaaatgtagagagaacataacaattgatgattattttataaaggaaaagacgagaattatggtaaatgcat |
30068052 |
T |
|
| Q |
104 |
gggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatca |
191 |
Q |
| |
|
|||| || ||||||||| ||| |||||||||| ||||||||| |||||| | ||| ||||||||||||| ||||||||||||||||| |
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| T |
30068051 |
gggcaatagggagagatcctaatgtttggtcagaaaatgctgaagaattttatccaaagagatttattgaaaagaaaatgaattatca |
30067964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 30043612 - 30043448
Alignment:
| Q |
26 |
tccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatgcatgggctattgggagagattgtaa |
125 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||| | ||||||| ||| ||||||||||||||||||| || ||||||||| ||| |
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| T |
30043612 |
tccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaa |
30043513 |
T |
|
| Q |
126 |
cgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatc |
190 |
Q |
| |
|
|||||||||| ||||||| | |||||| |||||||||||||| | || || ||||||||||||| |
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| T |
30043512 |
tgtttggtcagaaaatgctaaagaattttacccagagagatttgtagagaaaaaaatgaattatc |
30043448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 29995572 - 29995760
Alignment:
| Q |
1 |
ctttatcctgttggacccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatg |
100 |
Q |
| |
|
||||| ||||||| ||| ||| || |||||||||| | ||||||||||| || ||||||||| |||||||||| | ||||||| ||| |||||||||||| |
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|
| T |
29995572 |
ctttaccctgttgcaccattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacacgacttatagtaaatg |
29995671 |
T |
|
| Q |
101 |
catgggctattgggagagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattatc |
190 |
Q |
| |
|
||||||| || ||||||||| ||| |||||||||| |||||| || |||||| | ||||||||||||||||| || ||| ||||||||| |
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|
| T |
29995672 |
catgggcaatagggagagatcctaatgtttggtcagaaaatgccgaagaattttatccagagagatttattgagaa-aaactgaattatc |
29995760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 29944894 - 29945068
Alignment:
| Q |
15 |
acccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatgcatgggctattggg |
114 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||| | || | | |
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|
| T |
29944894 |
acccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgtaaaggaaaagacacgagttatagtaaatgcatttacaatagcg |
29944993 |
T |
|
| Q |
115 |
agagattgtaacgtttggtcaggaaatgctgatgaatttcacccagagagatttattgacaagaaaatgaattat |
189 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||| |||||| |||||||| |||||| | |||||| |||||||| |
|
|
| T |
29944994 |
agagatcctaatgtttggtcagaaaatgctgaagaattttgtccagagaggtttattaataagaaattgaattat |
29945068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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