View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_81 (Length: 202)
Name: NF17755_high_81
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_81 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 54423764 - 54423585
Alignment:
| Q |
18 |
ctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtg |
117 |
Q |
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| T |
54423764 |
ctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtg |
54423665 |
T |
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| Q |
118 |
taaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtccatc |
197 |
Q |
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| T |
54423664 |
taaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtgcatc |
54423585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 20127365 - 20127532
Alignment:
| Q |
30 |
gaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgt |
129 |
Q |
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| T |
20127365 |
gaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggcactaaaacttgatatatccaaggcatttgatagtgtaagttggcctt |
20127464 |
T |
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| Q |
130 |
acctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtccatc |
197 |
Q |
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| T |
20127465 |
acctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctggatgatgatgtgcatc |
20127532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 27645698 - 27645594
Alignment:
| Q |
39 |
catcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaag |
138 |
Q |
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| T |
27645698 |
catcatatgcgctgcaaaaccaaaggtaaaattggtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaag |
27645599 |
T |
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| Q |
139 |
ctatt |
143 |
Q |
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||||| |
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| T |
27645598 |
ctatt |
27645594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
| Q |
42 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
12461045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
| Q |
42 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt |
16861059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 10161314 - 10161217
Alignment:
| Q |
21 |
acagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
10161314 |
acagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgt |
10161217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
| Q |
42 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
1937 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 11625204 - 11625279
Alignment:
| Q |
43 |
atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
11625204 |
atatgcgctgcaagaataaaggaaaaaaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgt |
11625279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 9183091 - 9182994
Alignment:
| Q |
21 |
acagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
118 |
Q |
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| T |
9183091 |
acagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgt |
9182994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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