View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_82 (Length: 201)
Name: NF17755_high_82
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 14784665 - 14784813
Alignment:
| Q |
1 |
caaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacgatgcttaagtt |
100 |
Q |
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| T |
14784665 |
caaacataagtccaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttgagtt |
14784764 |
T |
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| Q |
101 |
ttgatggcaaacttattccatctaaatcagctttgagctcttatcatac |
149 |
Q |
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| T |
14784765 |
ttgatggcaaacttacgctatctaaatcagttttgagctcttatcatac |
14784813 |
T |
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Target: chr5 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 31116960 - 31116806
Alignment:
| Q |
32 |
aaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacgatgcttaagttttgatggcaaacttattccatctaaatcagc |
131 |
Q |
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| T |
31116960 |
aaagtttcataacatcattgaaaaaattcaaaacagactaagtgg-ttggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagc |
31116862 |
T |
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| Q |
132 |
tttgagctct-tatcatactatcatatgcagtattctaagcagcctaagacccttt |
186 |
Q |
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| T |
31116861 |
tttgagctttataccatactatcatatgcagtatgctaagctccctaaaacccttt |
31116806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 48899369 - 48899202
Alignment:
| Q |
3 |
aacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacgatgcttaagtttt |
102 |
Q |
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| T |
48899369 |
aacattagtgcaggtagagctactaggggaaagtttcataacgtcattgacaaaattcaaaatagactaagtgg-ttggaagcaacaatgctt-agtttt |
48899272 |
T |
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| Q |
103 |
gatggcaaacttattccatctaaatcagctttgagctct-tatcatactatcatatgcagtattctaagc |
171 |
Q |
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| || | ||||| | |||||||| || |||||||||| || | |||||||||||||||||| |||||| |
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| T |
48899271 |
gtcggtagacttactttatctaaattagttttgagctctataccttactatcatatgcagtatgctaagc |
48899202 |
T |
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