View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_1 (Length: 767)
Name: NF17755_low_1
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_1 |
 | |
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| [»] scaffold0856 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 17 - 757
Target Start/End: Original strand, 27658909 - 27659636
Alignment:
| Q |
17 |
aagaattgtaaggaaaagttatctcattgagtacagtatgaaagtgaatataaacacagttgaacatataatttaaaagatatagtgtcagtgatgaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27658909 |
aagaattgtaaggaaaagttatctcattgagtacagtatgaaagtgaatataaacacacttgaacatataatttaaaagatatagtgtcagtgatgaatt |
27659008 |
T |
|
| Q |
117 |
gagtannnnnnnnnnnnnnnnn-aagagatatgaatatgatatgtactttgagaaagtagattatgtttcgagtgaaacctatttatgttgaaattgtga |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27659009 |
gagtattttttttccttctttttaagagatatgaatatgatatgtactttgagaaagtagattatgtttcgagtgaaacctatttatgttgaaattgtga |
27659108 |
T |
|
| Q |
216 |
atagttgagtatttatatatgagaggtaacttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27659109 |
atagttgagtatttatatatgagagggaacttcttaatctttaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtc |
27659208 |
T |
|
| Q |
316 |
ttagagaacaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27659209 |
ttagagaacaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcctgggccttttctgctatctg |
27659308 |
T |
|
| Q |
416 |
gcctgagaagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtttata |
515 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27659309 |
gcctgagaagggaggtctgt-------------gctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtt--ta |
27659393 |
T |
|
| Q |
516 |
tatgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttaca-ttttttctgatgtttttgctgcattatatttgatgcaataagc |
614 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27659394 |
tatgaacaaagtccttgcttaaattatatttaatgtttttgtttgtgatgcttacatttttttctgatgttttagctgcattatatttgatgcaataagc |
27659493 |
T |
|
| Q |
615 |
ttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgag |
714 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27659494 |
ttgtaaatcaccatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgtg |
27659593 |
T |
|
| Q |
715 |
gatagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27659594 |
gatagttcaaatgctgttttggattgtggtagtattgatgatg |
27659636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 342 - 497
Target Start/End: Original strand, 32017255 - 32017413
Alignment:
| Q |
342 |
tgctatctgtagtagtgctgctatattaggggg-tgcagggagtgttttt--ctgcatgggccttttctgctatctggcctgagaagggaggtctgtaat |
438 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| ||| ||||||||| || |||| ||||| ||||||||||||||||||| |||||||||||| | | |
|
|
| T |
32017255 |
tgctatctgtagtagtgctgctgtcttgggggggtgcggggagtgttgtttactgcctgggctttttctgctatctggcctgggaagggaggtctttgct |
32017354 |
T |
|
| Q |
439 |
gtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggt |
497 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
32017355 |
gtttgtgaggcctttttatgctttctggtctgctgtttgcacctccccttttttctggt |
32017413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 17 - 757
Target Start/End: Complemental strand, 37605166 - 37604440
Alignment:
| Q |
17 |
aagaattgtaaggaaaagttatctcattgagtacagtatgaaagtgaatataaacacagttgaacatataatttaaaagatatagtgtcagtgatgaatt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37605166 |
aagaattgtaagaaaaagttatctcattcagtagagtatgaaagtgaatgtaaacacacttgaacatataatttaaaagaaatagtgtcagtgatgaatt |
37605067 |
T |
|
| Q |
117 |
gagtannnnnnnnnnnnnnnnnaagagatatgaatatgatatgtactttgagaaagtagattatgtttcgagtgaaacctatttatgttgaaattgtgaa |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
37605066 |
gagt-ttttttttcttctttttaagagatatgaatatgatatgtactttgagaaagtaga-----------gtgaaacctctttatgttgaaattgtgaa |
37604979 |
T |
|
| Q |
217 |
tagttgagtatttatatatgagaggtaacttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtct |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37604978 |
tagttgagtatttatatatgagagggaacttcataatcttgaagagaaaggtaggaatatagttgttgcattgatttcataagtgtggacttcagagtct |
37604879 |
T |
|
| Q |
317 |
tagagaacaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctgg |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
37604878 |
tagagaacaagttatttcactattttgctatctgtagtagtgctactatcttagggggtgcagggagtgtttttatggctgggccttttctgctatctgg |
37604779 |
T |
|
| Q |
417 |
cctgagaagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtttatat |
516 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| || |
|
|
| T |
37604778 |
cttgggaagggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctgctgtttgcgcctcccctgttttttggtatgctgtttgtgttt--at |
37604681 |
T |
|
| Q |
517 |
atgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttacattttttctgatgtttttgctgcattatatttgatgcaataagctt |
616 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37604680 |
atgaacaaagttcatgcttaaattatatttaatgtttttgtttgtgatgcttacgttgtttctgatgtttttgctacattatatttgatgcaataagctt |
37604581 |
T |
|
| Q |
617 |
gtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgagga |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
37604580 |
gtaaatcactatgtttgcaatataacttattattgatctaattaagtaattttgtgcagttttggtgtgccaatttcacccacaattgaaaatttatgga |
37604481 |
T |
|
| Q |
717 |
tagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
37604480 |
tagttcaaatgttcttgtggattgtggtagtattgatgatg |
37604440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 597 - 682
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
597 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
682 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 658 - 757
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
658 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| |||| || |||||||| || ||||||||||||||||| |||||| |
|
|
| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 757
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
658 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 25006956 - 25007036
Alignment:
| Q |
155 |
atatgtactttgagaaagtagattatgtttcgagtgaaacctatttatgttgaaattgtgaatagttgagtatttatatat |
235 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25006956 |
atatatactttgaaaaagtagattatgtttcgaatgaatcctctttatgttgaaaatgtgaatagttgagtatttatatat |
25007036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 25006891 - 25006960
Alignment:
| Q |
17 |
aagaattgtaaggaaaagttatctcattgagtacagtatgaaagtgaatataaacacagttgaacatata |
86 |
Q |
| |
|
|||||||||||| |||||| |||| ||| |||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
25006891 |
aagaattgtaagtaaaagtgatcttattcagtagagtatgaaagtgaatctaaacacacttgaacatata |
25006960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 25007242 - 25007314
Alignment:
| Q |
245 |
cttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtctt |
317 |
Q |
| |
|
|||| |||||||||||| || ||||| ||||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
25007242 |
cttcataatcttgaagaaaatggtaggaatataggcgttgcattgatttcataagtgtggacttcagagtctt |
25007314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 23352817 - 23352876
Alignment:
| Q |
366 |
attagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaag |
425 |
Q |
| |
|
||||||||||||||||||| ||||| | | ||||||||||||||| ||||||||| |||| |
|
|
| T |
23352817 |
attagggggtgcagggagtatttttattcctgggccttttctgctgtctggcctgggaag |
23352876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 477
Target Start/End: Original strand, 25542594 - 25542728
Alignment:
| Q |
342 |
tgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaagggaggtctgtaatgtt |
441 |
Q |
| |
|
|||||||| |||||| ||||| | |||||| |||| |||||| ||||||||| |||| ||||| | |||||| |||| | |||| |||| | |||| |
|
|
| T |
25542594 |
tgctatctttagtagcactgctgtcttagggagtgctgggagtatttttctgcctggggctttttttctatctaacctgggt-gggaagtcttttctgtt |
25542692 |
T |
|
| Q |
442 |
tgtgaggcctgtttgtgatttctggtctgctgtttg |
477 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25542693 |
tgtgaggcctgtttgtgttttctggtctgctgtttg |
25542728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 757
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
658 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 757
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
658 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
757 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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