View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_11 (Length: 583)
Name: NF17755_low_11
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_11 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 562
Target Start/End: Complemental strand, 17831775 - 17831224
Alignment:
| Q |
11 |
atcatcaccgaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatc |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17831775 |
atcatcaccgaaatgatgaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatc |
17831676 |
T |
|
| Q |
111 |
ttaagcgttggagagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831675 |
ttaagcgttggagagggagataaactgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagag |
17831576 |
T |
|
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831575 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
17831476 |
T |
|
| Q |
311 |
atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctcttt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17831475 |
atggatgtttaagatttagcaacagaagaagcatcgtcgatgaagggagagagaaacgacgaaagatttcggttcatattacgatgacatctttctcttt |
17831376 |
T |
|
| Q |
411 |
ctctggagaagttgaattgtgatggtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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|
| T |
17831375 |
ctctggagaagttgaattgtgatggtttctgtgggtcggaatcacggttgcggcggagatgaaatggccagatttggcgccgccacgggagagagaagag |
17831276 |
T |
|
| Q |
511 |
ggactgaaaatggaagatgaatttctcagatcagagaaaaatggcgtgatag |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831275 |
ggactgaaaatggaagatgaatttctcagatcagagaaaaatggcgtgatag |
17831224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 559
Target Start/End: Complemental strand, 7135805 - 7135282
Alignment:
| Q |
15 |
tcaccgaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaa |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |
|
|
| T |
7135805 |
tcaccgaaatggagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaa |
7135706 |
T |
|
| Q |
115 |
gcgttggagagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaac |
214 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135705 |
gcgttggagagggagaaaaaatgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaac |
7135606 |
T |
|
| Q |
215 |
aaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatgg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
7135605 |
aaaa---------------------aactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatgg |
7135527 |
T |
|
| Q |
315 |
atgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctct |
414 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7135526 |
atgtttgagatttagcaacagaagaagcattgttgatgaagggagagagaaacgacggaagatttcggttcatattacgatgacatctttctctttctct |
7135427 |
T |
|
| Q |
415 |
ggagaagttgaattgtgatggtttctgtgggtcggaatcacgattgcggcggagatgaaatggccaaatttggcgccgtcgcgggagagagaagagggac |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||||||||||| |
|
|
| T |
7135426 |
ggagaagttgaattgtgatggtttctgtgggtcagaatcacggttacggcggagatgaaatggccagatttggtgccgctacaggagagagaagagggac |
7135327 |
T |
|
| Q |
515 |
tgaaaatggaagatgaatttctcagatcagagaaaaatggcgtga |
559 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7135326 |
tgaaaatggaagatgaatttctcatatcagagaaaaatggcgtga |
7135282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
| Q |
142 |
tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa |
239 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52525386 |
tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa |
52525485 |
T |
|
| Q |
240 |
aactattaccttgagagaaaattcacaaaa |
269 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
52525486 |
aacgattaccttgagagaaaattcacaaaa |
52525515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 211 - 371
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
310 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | |||||||||||| | ||||| | |||||||||| |
|
|
| T |
22292156 |
aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata |
22292255 |
T |
|
| Q |
311 |
atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg |
371 |
Q |
| |
|
|||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
22292256 |
atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg |
22292316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 52525311 - 52525386
Alignment:
| Q |
19 |
cgaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt |
94 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
52525311 |
cgaaatggagaagaaggtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt |
52525386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 499 - 554
Target Start/End: Complemental strand, 33865939 - 33865884
Alignment:
| Q |
499 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33865939 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
33865884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
| Q |
237 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
296 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
37362214 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
37362273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 499 - 554
Target Start/End: Complemental strand, 11075226 - 11075171
Alignment:
| Q |
499 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11075226 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
11075171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
285 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
10093117 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
10093043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
292 |
Q |
| |
|
||||| ||||||||||||||||| || ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
33044908 |
aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
33044989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 23216755 - 23216810
Alignment:
| Q |
499 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23216755 |
gagagagaagagggactgaaaatggaagatgaatttctcatatcagagaaaaatgg |
23216810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 30765777 - 30765831
Alignment:
| Q |
499 |
gagagagaagagggactgaaaatggaagatgaatttctcagatcagagaaaaatgg |
554 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
30765777 |
gagagagaagagggactgaaa-tggaagatgactttctctcatcagagaaaaatgg |
30765831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagag |
256 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
17682425 |
aaacacaattcaattcatagaaagggaaaaacgattaccttgagag |
17682380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
292 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||||||||||||||||| |
|
|
| T |
5658415 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg |
5658334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
| Q |
212 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
285 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
14677485 |
aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
14677558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
292 |
Q |
| |
|
||||| ||||||||||||||||| | ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
31100334 |
aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
31100415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 11096 - 11176
Alignment:
| Q |
211 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg |
291 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||| |||||||||||| |
|
|
| T |
11096 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg |
11176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
| Q |
212 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
292 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||| ||| || |||||| | |||||||||||| |||||| |
|
|
| T |
35719 |
aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg |
35639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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