View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_12 (Length: 581)
Name: NF17755_low_12
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 3 - 568
Target Start/End: Original strand, 40359817 - 40360382
Alignment:
| Q |
3 |
gatgtcgaagaaaatttatgtattatttcattctaaaatgtatattaagaactacgaaaggaagaagaacatgtctgatatannnnnnnnaacaagtaaa |
102 |
Q |
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| T |
40359817 |
gatgtagaataaaatttatgtattatttcattctaaaatgtatattaagaactacgaaaggaagaagaacatgtctgatatattttttttaacaagtaaa |
40359916 |
T |
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| Q |
103 |
aatcatttttgttaaataatatgaccaatgacgagggttagatagatacgacagtacgtggagacaaggggaagactatacgtgtaagtacattgatatt |
202 |
Q |
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| T |
40359917 |
aatcatttttgttaaataatatgaccaatgacgagggttagatagatacgacagtacgtggagacaaggggaagactatacgtgtaagtacattgatatt |
40360016 |
T |
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| Q |
203 |
tttatagtagatgataagtagtgaagggatagtaattgtgataacattcaatccaaacaatctatgcgaaggggatgatatggttagttatgttaagggc |
302 |
Q |
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| T |
40360017 |
tttatagtagatgataagtagtgaagggatagtaattgtgataacattcaatccaaacaatctatgcgaaggggatgatatggttagttatgttaagggc |
40360116 |
T |
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| Q |
303 |
gagttgatcatagtgaggcccttcagttcaatttaaggtagaaaggaacacgaagatgtacttgcaagtcacacacatgatatttgggggtgtttgcatc |
402 |
Q |
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| T |
40360117 |
gagttgatcatagtgaggcccttcagttcaatttaaggtagaaaggaacacgaagatttacttgcaagtcacacacatgatatttgggggtgtttgcatc |
40360216 |
T |
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| Q |
403 |
acatgtgatgcgaaactagattccataaaatgttaaatattgataaaatggagataaaatctccacacacaaaaatgatgagtgaataggctatttcatt |
502 |
Q |
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| T |
40360217 |
acatgtgatgtgaaactaaattctataaaatgttaaatattgataaaatggagacaaaatctccacacacaaaaatgatgagtgaataggctatttcatt |
40360316 |
T |
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| Q |
503 |
cttgaatttgtatgcatcagtcaattttatcctcaattttattttatttttaaatagttaataagt |
568 |
Q |
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| T |
40360317 |
cttgaatttgtatgcatcagtcaattttatcctcaattttttttttttttgaaatagttaataagt |
40360382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 40364265 - 40364413
Alignment:
| Q |
339 |
ggtagaaaggaacacgaagatgtacttgcaagtcacacacatgatatttgggggtgt--ttgcatcacatgtgatgcgaaactagattccataaaatgtt |
436 |
Q |
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| T |
40364265 |
ggtagaaaggaatacgaagatgtacttgcaggtcacatacatgatatttgggggtgtgtttgcatcacatgtgatgtgaaactagattccataaaatgtc |
40364364 |
T |
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| Q |
437 |
aaatattgataaaatg-ga--gataaaatctccacacacaaaaatgatg |
482 |
Q |
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| T |
40364365 |
aaatattgataaaatgagaacaaaaaaatctccacacacaaaaatgatg |
40364413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40364106 - 40364177
Alignment:
| Q |
13 |
aaaatttatgtattatttcattctaaaatgtatattaagaactacgaaaggaagaagaacatgtctgatata |
84 |
Q |
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| T |
40364106 |
aaaatttatgtattatttcattctaaactgtatattaaaaattatgaaaggtagagaaacatgtctgatata |
40364177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 542
Target Start/End: Complemental strand, 40361753 - 40361693
Alignment:
| Q |
482 |
gagtgaataggctatttcattcttgaatttgtatgcatcagtcaattttatcctcaatttt |
542 |
Q |
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| T |
40361753 |
gagtgaatagtctatttcatccctaaatttgtatgcattagttaatttcatcctcaatttt |
40361693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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