View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_13 (Length: 568)

Name: NF17755_low_13
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_13
NF17755_low_13
[»] chr4 (11 HSPs)
chr4 (15-372)||(44879562-44879919)
chr4 (25-549)||(44861584-44862119)
chr4 (45-372)||(44848115-44848439)
chr4 (30-244)||(44836269-44836483)
chr4 (51-308)||(44897150-44897407)
chr4 (410-549)||(44879401-44879536)
chr4 (283-372)||(44836166-44836252)
chr4 (507-549)||(44847968-44848010)
chr4 (397-473)||(44896970-44897047)
chr4 (511-549)||(44836076-44836114)
chr4 (512-549)||(44896851-44896888)
[»] chr3 (2 HSPs)
chr3 (91-236)||(12927449-12927594)
chr3 (511-549)||(12927749-12927787)
[»] chr8 (1 HSPs)
chr8 (511-549)||(22637878-22637916)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 44879919 - 44879562
Alignment:
Q  15 cagagagggtgagaaaatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgat 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879919 cagacagggtgagaaaatgcaaagaacagagagtgaaatggttaaattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgat 44879820  T
Q  115 aatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaacca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  44879819 aatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaacca 44879720  T
Q  215 gtgatgtcagaataacctacataaaatgcacatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattgga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879719 gtgatgtcagaataacctacataaaatgcacatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattgga 44879620  T
Q  315 tgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879619 tgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa 44879562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 549
Target Start/End: Complemental strand, 44862119 - 44861584
Alignment:
Q  25 gagaaaatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaa 124  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||  ||||||||| ||||| |||||||| || |||||| | ||||| |||||||    
T  44862119 gagaaaatgccaagaacagagaatgaaatagttatattcttacctaagactgagccgaatatcacgaaacacaatatgtagatcacagataaggcaagaa 44862020  T
Q  125 aataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcag 224  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  44862019 aatatccatatgaaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcag 44861920  T
Q  225 aataacctacataaaatgc--acatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattggatgtcagat 322  Q
    |||||||| ||||||||||  | |||||| ||| |  ||||||| |||||||||||||  ||||| |||||||||||||||| |||||||||||| ||||    
T  44861919 aataacctgcataaaatgcatatatagagtttactcgtgttgaagagataaatacactaaaacatttattctgttgtgtttg-attattggatgttagat 44861821  T
Q  323 acaattattgactttgaatacgtgtcatatattgttccatgagcagaa----------------aaagtttactttcatcatggctatggac--atataa 404  Q
    |||||| ||||  ||||||||  ||||| |||||||||||||||||||                ||||||||||||||||||||||   |||  ||||||    
T  44861820 acaattgttgaaattgaatactagtcatgtattgttccatgagcagaaaatccaaattgaattgaaagtttactttcatcatggctgcagacatatataa 44861721  T
Q  405 agttgatttagggacataaaaaatatcacagctatttgaaaaatcaaaattggccattagctacgtatttcttgatcatatatctatctgttcagatatt 504  Q
    || ||||||| |||||  || ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| | |||    ||| ||||||||||      
T  44861720 aggtgatttatggacagcaagaatatcagagctatttgaaaactcaaaattggccattagctacttatttcttgctgata----tatttgttcagata-- 44861627  T
Q  505 tctttctgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
      ||||||||||||| ||||||||||||||||||||||| |||||    
T  44861626 --tttctgcacttaccggaaaaagttgcaggacgacccaagtaaa 44861584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 45 - 372
Target Start/End: Complemental strand, 44848439 - 44848115
Alignment:
Q  45 gagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaac 144  Q
    |||| ||||||||||||||||||| |||  |||||| ||| |||||||||| || || |||||| | ||||| ||||||||||| || |||| ||||| |    
T  44848439 gagttaaatggttatattcttaccaaagactgagccaaacgtcacaaaacataaaatgtagatcaccgataaggcaagaaaatagccgtatgaaatcatc 44848340  T
Q  145 caatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataacctacataaaatgca 244  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44848339 caatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataacctacataaaatgca 44848240  T
Q  245 catagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattggatgtcagatacaattattgactttgaatacg 344  Q
    ||| ||| ||||| |||||||||||||||||||| |  ||||||||||||| |||| ||||||||   ||||| |||||||||| |||||||||||||||    
T  44848239 catggaggttaatcatgttgaacagataaatacattacaacatatattctgctgtgcttgcatta---gatgttagatacaattgttgactttgaatacg 44848143  T
Q  345 tgtcatatattgttccatgagcagaaaa 372  Q
     ||||| |||||||||||||||||||||    
T  44848142 agtcatgtattgttccatgagcagaaaa 44848115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 44836483 - 44836269
Alignment:
Q  30 aatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataa 129  Q
    ||||| ||||| ||||||| ||||  || |||||||||| |||  ||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||    
T  44836483 aatgccaagaatagagagtcaaataattttattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataa 44836384  T
Q  130 ccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataa 229  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||    
T  44836383 ccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaa 44836284  T
Q  230 cctacataaaatgca 244  Q
    |||| ||||||||||    
T  44836283 cctatataaaatgca 44836269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 51 - 308
Target Start/End: Complemental strand, 44897407 - 44897150
Alignment:
Q  51 aatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatat 150  Q
    |||||||||||||||||||| |  |||||| || |||||||| |||||||| |||||| ||||||| ||||| ||||||||||||||||||| |||||||    
T  44897407 aatggttatattcttacctaggactgagccaaatatcacaaagcacaacatgtagatcactgataaggcaaggaaataaccatatgtaatcatccaatat 44897308  T
Q  151 ggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataacctacataaaatgcacataga 250  Q
    || || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||| | ||||||||| |||||   |||||    
T  44897307 ggtccatcaccaagaccatgcattttcatcatgattctcaatttttgttgcttctcataaatcagtgatgtcagcacaacctacattaaatgtgtataga 44897208  T
Q  251 gcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcatt 308  Q
    ||||| | || || || ||| |||||||||  ||||| |||| ||  |||||||||||    
T  44897207 gcttactcatattaaaaagaaaaatacactaaaacatctattatgcagtgtttgcatt 44897150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 410 - 549
Target Start/End: Complemental strand, 44879536 - 44879401
Alignment:
Q  410 atttagggacataaaaaatatcacagctatttgaaaaatcaaaattggccattagctacgtatttcttgatcatatatctatctgttcagatatttcttt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    ||||||||||||||||||||    
T  44879536 atttagggacataaaaaatatcacagctatttgaaaaatcaaaattgaccattagctacttatttcttgatcatat----atctgttcagatatttcttt 44879441  T
Q  510 ctgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44879440 ctgcacttacaggaaaaagttgcaggacgacccatgtaaa 44879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 44836252 - 44836166
Alignment:
Q  283 aacatatattctgttgtgtttgcattattggatgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa 372  Q
    ||||| ||||||||||||| |||||||   ||||| || ||| ||||||||||||||| | | || || |||||||||||||||||||||    
T  44836252 aacatctattctgttgtgtgtgcatta---gatgttaggtacgattattgactttgaagatgagtaatgtattgttccatgagcagaaaa 44836166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 549
Target Start/End: Complemental strand, 44848010 - 44847968
Alignment:
Q  507 tttctgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  44848010 tttctgcacttaccggaaaaagtagcaggacgacccatgtaaa 44847968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 44897047 - 44896970
Alignment:
Q  397 acatataaagttgatttagggacataaaa-aatatcacagctatttgaaaaatcaaaattggccattagctacgtatt 473  Q
    |||||||||| |||||||||||||   || ||||||| |||||||| |||||||||||| ||||| ||||||| ||||    
T  44897047 acatataaagctgatttagggacaggtaagaatatcaaagctatttcaaaaatcaaaatcggccaatagctacctatt 44896970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 549
Target Start/End: Complemental strand, 44836114 - 44836076
Alignment:
Q  511 tgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  44836114 tgcacttactggaaaaagttgcaggacaacccatgtaaa 44836076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 44896888 - 44896851
Alignment:
Q  512 gcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  44896888 gcacttaccggaaaaagttgcagaacgacccatgtaaa 44896851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 12927449 - 12927594
Alignment:
Q  91 aaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattctta 190  Q
    ||||||||||| |||||   |||||  |||||||||||||  || | ||| | |||||||||||| ||||| |||||||||||||||||||| ||||| |    
T  12927449 aaacacaacatgtagataattgatatggcaagaaaataactgtaagaaataatccaatatggcccatcaccgagaccatgcattttcatcatgattctca 12927548  T
Q  191 atttttgctgcttctcataaaccagtgatgtcagaataacctacat 236  Q
    | ||||| |||||||| ||||| | |||||| || | |||||||||    
T  12927549 aattttgttgcttctcgtaaactaatgatgtgaggacaacctacat 12927594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 549
Target Start/End: Original strand, 12927749 - 12927787
Alignment:
Q  511 tgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  12927749 tgcacttacaggaaaaagttgcaagatgacccatgtaaa 12927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 549
Target Start/End: Complemental strand, 22637916 - 22637878
Alignment:
Q  511 tgcacttacaggaaaaagttgcaggacgacccatgtaaa 549  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  22637916 tgcacttaccggaaaaagttgcaggacaacccatgtaaa 22637878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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