View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_17 (Length: 523)
Name: NF17755_low_17
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_17 |
 |  |
|
| [»] scaffold0094 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 42414892 - 42415383
Alignment:
| Q |
14 |
gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42414892 |
gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcgaggagcaaa |
42414991 |
T |
 |
| Q |
114 |
actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414992 |
actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga |
42415091 |
T |
 |
| Q |
214 |
agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt |
313 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
42415092 |
agcagttggattgcgtgatgccatctcttggcttggcagattaggactgtcgaaggtgcttgtagaactagattgcaaactagtggttgatagcattttt |
42415191 |
T |
 |
| Q |
314 |
gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagac |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
42415192 |
gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcggtcgcgtttaaaacattatccaaactttaggataagttttgttaggagac |
42415291 |
T |
 |
| Q |
414 |
aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
42415292 |
aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaggagtttgatttgattccatcatatattgaaact |
42415383 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 38176356 - 38176242
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||||| ||||||||| |
|
|
| T |
38176356 |
aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg |
38176257 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38176256 |
attccatcttgtatt |
38176242 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 8178143 - 8178029
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||||| ||| | |||| ||||| ||| ||| | ||||||| | |
|
|
| T |
8178143 |
aaactttaagataagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttttgattgg |
8178044 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8178043 |
attccatcttgtatt |
8178029 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 38195681 - 38195565
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||| ||||||||||| |||||| ||||| | | ||| ||||| ||||||||| ||| ||||| |
|
|
| T |
38195681 |
aaactttaagataagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcaccaagtgttcaatttg |
38195582 |
T |
 |
| Q |
485 |
attccatcttgtattga |
501 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38195581 |
attccatcttgtattga |
38195565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 10486604 - 10486560
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10486604 |
aaactttaagataagttttgttaggagacaagcaaattatgtcgc |
10486560 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 14856 - 15344
Alignment:
| Q |
14 |
gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14856 |
gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgagaagtttgttaaatgcaacgtggacgcagccatgttcgaggagcaaa |
14955 |
T |
 |
| Q |
114 |
actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14956 |
actattttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccgcaatctggtatgaaggcaaacctctcccacgagaagcaga |
15055 |
T |
 |
| Q |
214 |
agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt |
313 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
15056 |
agcagttggattgcgtgatttcatctcttggcttggaagattaggactgtcgaaggtgcttatagaactagattgcaaactagtggttgatagcattttt |
15155 |
T |
 |
| Q |
314 |
gataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15156 |
gataggaatagcaatcaagcggagtttg---gtatcatatccgaatgtcggtcgtgtttaaaacattatccaaactttaagataagttttgttaggagac |
15252 |
T |
 |
| Q |
414 |
aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
15253 |
aagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttaattccattttatattgaaact |
15344 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 53919917 - 53920411
Alignment:
| Q |
14 |
gaacctgtgcaaaatcagcagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggacgcagccatgttcaaggagcaaa |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
53919917 |
gaacctgtgcaaaatcagtagcagcaagtagcaatttggcagccaccagatgaggagtttgttaaatgcaacgtggatgcagccatgttcgaggagcaaa |
53920016 |
T |
 |
| Q |
114 |
actgttttgggataggtatgtgcattcggaatcatcgaggtatgttcgtaaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcaga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53920017 |
actgttttgggataggtatgtgcattcggaatcatcgaggtctgttcgtaaaggcagctacaacctggtatgaaggcaaacctctcccacgagaagaaga |
53920116 |
T |
 |
| Q |
214 |
agcagttggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcattttt |
313 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
53920117 |
agcagttggattgcgtgatgccatctcttggcttggcagattaggactgtcgaaggtgcttatagaactggattgcaaactagtgtttgatagcattttt |
53920216 |
T |
 |
| Q |
314 |
gataggaat---agcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttagga |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| ||||| | ||||| |||||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
53920217 |
gataggaatagcagcaatcaagcggagtttggtagtctcatatctgaatgccggtcgcttttaaaacattatccaaactttaagatgagttttgttagaa |
53920316 |
T |
 |
| Q |
411 |
gacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattgaaact |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53920317 |
gacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgttttgattccatcttgtattgaaact |
53920411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 501
Target Start/End: Original strand, 1929998 - 1930228
Alignment:
| Q |
271 |
gcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgt |
370 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||| ||||| | | | |
|
|
| T |
1929998 |
gcttatagaactagattgtaagctagtggttgatagcatagttgataggaatatgaatcaatcggagtttggtagtattatatccgattgtcaagctctt |
1930097 |
T |
 |
| Q |
371 |
ttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcacc |
470 |
Q |
| |
|
||| || | ||| ||||||||| |||||||||| ||||||| | ||||||| |||| ||||||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
1930098 |
ttacaataacatccaaactttaaaataagttttgctaggagaaatgctaattatgtcactcatactttagcaggggcgtcaagattacatgctcgtcacc |
1930197 |
T |
 |
| Q |
471 |
aagagtttgatttgattccatcttgtattga |
501 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
1930198 |
aacagtttgatttgattccatcttgtattga |
1930228 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 1527265 - 1527379
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||||| ||||||||| |
|
|
| T |
1527265 |
aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg |
1527364 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1527365 |
attccatcttgtatt |
1527379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 25500952 - 25501072
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||| |||| |||||| |||| ||||| ||||| || | |||| |||||||||||| || ||| ||||| |
|
|
| T |
25500952 |
aaactttaagataaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttg |
25501051 |
T |
 |
| Q |
485 |
attccatcttgtattgaaact |
505 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25501052 |
attccatcttgtattgaaact |
25501072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 440
Target Start/End: Original strand, 26924303 - 26924496
Alignment:
| Q |
246 |
ttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtag |
345 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||| | ||||| || ||||||| |||||||||||| ||| |||| ||||||||||| |
|
|
| T |
26924303 |
ttggtagattaggcctatcgaaggtgcttatagaactagattgtacgctagtaatttatagcatagttgataggaataccaaccaagtagagtttggtag |
26924402 |
T |
 |
| Q |
346 |
tatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttag |
440 |
Q |
| |
|
|| ||||| || ||||| | ||| ||| | ||| ||| ||||||||||||||| || |||||||| |||| ||||||||||||| |||| |
|
|
| T |
26924403 |
cattatatctgattgtcaagc-ttttttaaagaacatccaaagtttaagataagttttactaagagacaagttaatgttgtcgctcatactttag |
26924496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 8690524 - 8690566
Alignment:
| Q |
459 |
atgctcgtcaccaagagtttgatttgattccatcttgtattga |
501 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
8690524 |
atgctcgtcaccaggtgtttgatttgattccatcgtgtattga |
8690566 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 9042393 - 9042435
Alignment:
| Q |
459 |
atgctcgtcaccaagagtttgatttgattccatcttgtattga |
501 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
9042393 |
atgctcgtcaccaggtgtttgatttgattccatcgtgtattga |
9042435 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 40316324 - 40316377
Alignment:
| Q |
380 |
tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcat |
433 |
Q |
| |
|
|||| ||||||||| |||||||| |||| |||||||||||||| ||| |||||| |
|
|
| T |
40316324 |
tatccaaactttaacataagtttagttatgagacaagctaattatgttgctcat |
40316377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 499
Target Start/End: Complemental strand, 35581743 - 35581408
Alignment:
| Q |
163 |
aaaggcagccacaatctggtatgaaggcaaacctctcccacgagaagcagaagcagttggattgcatgatgccatctactggcttggcagattaggactg |
262 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||| |||| |||||| |||||||| ||||| |||||||| || || |||||||| || ||||| |
|
|
| T |
35581743 |
aaaggcagccacaacttggcatgaaggcaatcctcccccaaaagaagcggaagcagtaggattacatgatgctatttattggcttggtctatgaggacca |
35581644 |
T |
 |
| Q |
263 |
tcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtc |
362 |
Q |
| |
|
|| ||||||| |||||||||||||||| || |||||||||||||||| ||||| |||| | |||| ||| ||| ||||||| |||||||| ||||||| |
|
|
| T |
35581643 |
tcaaaggtgcatatagaactagattgccaagtagtagttgatagcataattgatgggaacaccaataaagtggactttggtaatatcatatatgaatgtc |
35581544 |
T |
 |
| Q |
363 |
agtcgcgtttaaaacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgc |
462 |
Q |
| |
|
| |||| |||| |||| |||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||| | || |||| ||| |||||| || | |
|
|
| T |
35581543 |
actcgcttttacaacaatatcataactttaagataagttttgttagaagacaaactaatattgtcgctcatac-tctgcaagggtgtcaagattgtatcc |
35581445 |
T |
 |
| Q |
463 |
tcgtcaccaagagtttgatttgattccatcttgtatt |
499 |
Q |
| |
|
| ||||| || ||||||||||||||||||| |||| |
|
|
| T |
35581444 |
tagtcactaaatttttgatttgattccatcttatatt |
35581408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 4318836 - 4318722
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| ||| | ||| | ||||||||||||| ||||||||| |
|
|
| T |
4318836 |
aaactttaagataagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttg |
4318737 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4318736 |
attccatcttgtatt |
4318722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 31015559 - 31015443
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||||| | |||| ||||| | || ||| || || ||||||||||||||| |||||||||| |
|
|
| T |
31015559 |
aaactttaagataaattttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatttg |
31015460 |
T |
 |
| Q |
485 |
attccatcttgtattga |
501 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31015459 |
attccatcttgtattga |
31015443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 28626470 - 28626356
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||| || ||| | ||| | ||||||||||||| ||||||||| |
|
|
| T |
28626470 |
aaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcaccaagtctttgatttg |
28626371 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
28626370 |
attccattttgtatt |
28626356 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 29370229 - 29370340
Alignment:
| Q |
221 |
ggattgcatgatgccatctactggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaattagtagttgatagcatttttgatagga |
320 |
Q |
| |
|
||||| |||||||| || | |||||||| |||||||| |||| ||||||||||||||||||||||| || |||| ||||||||||| ||||||||| |
|
|
| T |
29370229 |
ggattacatgatgctatttcttggcttggtagattaggcttgtcaaaggtgcttatagaactagattgtaagctagtggttgatagcataattgatagga |
29370328 |
T |
 |
| Q |
321 |
atagcaatcaag |
332 |
Q |
| |
|
||| ||||||| |
|
|
| T |
29370329 |
atactaatcaag |
29370340 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 34212768 - 34212882
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||| |||||||| ||| ||||| || | ||| | ||| ||| || |||||| | ||||||||| |
|
|
| T |
34212768 |
aaactttaagataaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgatttg |
34212867 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
34212868 |
attccatcttatatt |
34212882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 494
Target Start/End: Original strand, 6409598 - 6409703
Alignment:
| Q |
389 |
tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc |
488 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||| || || ||||| | ||| | ||| | ||||||||||||| ||| ||||||||| |
|
|
| T |
6409598 |
tttaagataagttttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatattacaagctcgtcaccaagtctttaatttgattc |
6409697 |
T |
 |
| Q |
489 |
catctt |
494 |
Q |
| |
|
|||||| |
|
|
| T |
6409698 |
catctt |
6409703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 40357092 - 40357048
Alignment:
| Q |
389 |
tttaagataagttttgttaggagacaagctaattttgtcgctcat |
433 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||| |||||| |
|
|
| T |
40357092 |
tttaagataagtttagttatgagacaaactaattttgttgctcat |
40357048 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 312 - 501
Target Start/End: Complemental strand, 1101160 - 1100971
Alignment:
| Q |
312 |
ttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcagtcgcgtttaaaacattatcgaaactttaagataagttttgttaggag |
411 |
Q |
| |
|
|||||| |||| ||| |||||| ||||| ||||||| |||||||| ||||| | | |||| |||| ||| ||||||||||| |||||||| |||||| |
|
|
| T |
1101160 |
ttgatatgaatgccaaccaagcgaagttttgtagtattatatccgattgtcaagctcttttacaacaacatccaaactttaagaaaagttttgctaggag |
1101061 |
T |
 |
| Q |
412 |
acaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttgtattga |
501 |
Q |
| |
|
|||| | ||||||||||||||||| |||| ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1101060 |
acaatcaaattttgtcgctcatactttagtaggggagtcaagattacatgctcgtcaccaacagtttgatttgattccatcttgtattga |
1100971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 1083197 - 1083075
Alignment:
| Q |
242 |
tggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaa-ttagtagttgatagcatttttgataggaatagcaatcaagcggagttt |
340 |
Q |
| |
|
|||||||| |||||||| | || |||||| |||||||||||||||| ||| || || |||||||||| | |||||||| | ||| |||| ||||||| |
|
|
| T |
1083197 |
tggcttggtagattaggcttatcaaaggtgtttatagaactagattgtaaacttggtgattgatagcatagtcgataggaagaccaaccaagtggagttt |
1083098 |
T |
 |
| Q |
341 |
ggtagtatcatatccgaatgtca |
363 |
Q |
| |
|
||| |||||||||| || ||||| |
|
|
| T |
1083097 |
ggttgtatcatatctgattgtca |
1083075 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 1085837 - 1085715
Alignment:
| Q |
242 |
tggcttggcagattaggactgtcgaaggtgcttatagaactagattgcaaa-ttagtagttgatagcatttttgataggaatagcaatcaagcggagttt |
340 |
Q |
| |
|
|||||||| |||||||| | || |||||| |||||||||||||||| ||| || || |||||||||| | |||||||| | ||| |||| ||||||| |
|
|
| T |
1085837 |
tggcttggtagattaggcttatcaaaggtgtttatagaactagattgtaaacttggtgattgatagcatagtcgataggaagaccaaccaagtggagttt |
1085738 |
T |
 |
| Q |
341 |
ggtagtatcatatccgaatgtca |
363 |
Q |
| |
|
||| |||||||||| || ||||| |
|
|
| T |
1085737 |
ggttgtatcatatctgattgtca |
1085715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 28909796 - 28909706
Alignment:
| Q |
405 |
ttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattccatcttg |
495 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| || ||||||| ||| | ||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
28909796 |
ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttg |
28909706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 31385893 - 31385773
Alignment:
| Q |
385 |
aaactttaagat-aagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgattt |
483 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||| | ||| ||||| |||| ||| |||||||||| |
|
|
| T |
31385893 |
aaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagc-agggtgtcaaaattacatgcttgtcatcaacagtttgattt |
31385795 |
T |
 |
| Q |
484 |
gattccatcttgtattgaaact |
505 |
Q |
| |
|
||||| ||||||| |||||||| |
|
|
| T |
31385794 |
gattctatcttgtgttgaaact |
31385773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 8618433 - 8618319
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||| |||| ||| | ||| || |||||||||| || |||||| |
|
|
| T |
8618433 |
aaacttcaagataagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgatttg |
8618334 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8618333 |
attccatcttgtatt |
8618319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 2704077 - 2704026
Alignment:
| Q |
384 |
gaaactttaagataagttttgttaggagacaagctaattttgtcgctcatac |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2704077 |
gaaactttaagataagttttgttaggagacaagcaaattatgtcgctcatac |
2704026 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 15074460 - 15074411
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcata |
434 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
15074460 |
aaactttaagataagttttgttagaagacaagcaaattgtgtcgctcata |
15074411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 31385999 - 31385930
Alignment:
| Q |
277 |
agaactagattgcaaattagtagttgatagcatttttgataggaatagcaatcaagcggagtttggtagt |
346 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| |||||||||| | ||||||| ||||||| |||||| |
|
|
| T |
31385999 |
agaactagactgcaagctagtggttgatagcattcttgataggaacaccaatcaaacggagttcggtagt |
31385930 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 11743945 - 11744000
Alignment:
| Q |
375 |
aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgct |
430 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||||||||| | |||| ||||||| |
|
|
| T |
11743945 |
aacattatccaaactttaagataaattttgtaaggagacaaacaaattatgtcgct |
11744000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 12186854 - 12186970
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| ||||| |||| ||||| | || ||| | || ||||||||||||||| |||||||||| |
|
|
| T |
12186854 |
aaactttaagataagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatttg |
12186953 |
T |
 |
| Q |
485 |
attccatcttgtattga |
501 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12186954 |
attccatcttgtattga |
12186970 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 22497759 - 22497645
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||| |||| ||| | ||| |||||||||||| | ||||||||| |
|
|
| T |
22497759 |
aaactttaagataagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgatttg |
22497660 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
22497659 |
attccttcttgtatt |
22497645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 501
Target Start/End: Original strand, 4428968 - 4429080
Alignment:
| Q |
389 |
tttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttgattc |
488 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||| | |||| ||||| | || ||| || || |||||||| | ||| |||||||||||||| |
|
|
| T |
4428968 |
tttaagataagttttgttaggaggcaagcaaattctgtcacccatagcttagcaaaggtgtcaggaatgtatgctcgttagcaaatgtttgatttgattc |
4429067 |
T |
 |
| Q |
489 |
catcttgtattga |
501 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
4429068 |
catcttctattga |
4429080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 450
Target Start/End: Complemental strand, 41787974 - 41787904
Alignment:
| Q |
380 |
tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtc |
450 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||| ||||| |||||||| |
|
|
| T |
41787974 |
tatccaaactttgagataaattttgttaggagacaagctaattatgttgctcattgattagcaagggcgtc |
41787904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 491
Target Start/End: Complemental strand, 43391165 - 43391059
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||| |||||||||| || |||||||||| |||| |||||| ||||| ||||| |||| ||| | | || ||||| |||| || | ||||||||| |
|
|
| T |
43391165 |
aaactttatgataagttttattcggagacaagcaaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttg |
43391066 |
T |
 |
| Q |
485 |
attccat |
491 |
Q |
| |
|
||||||| |
|
|
| T |
43391065 |
attccat |
43391059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 32912850 - 32912902
Alignment:
| Q |
380 |
tatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctca |
432 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
32912850 |
tatccaaactttaagataagttttgttaggcgacgagcaaattttgttgctca |
32912902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 26917409 - 26917441
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagc |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
26917409 |
aaactttaagataagttttattaggagacaagc |
26917441 |
T |
 |
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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 4816699 - 4816823
Alignment:
| Q |
375 |
aacattatcgaaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaaga |
474 |
Q |
| |
|
|||||| || |||||||||||||| || ||| ||||||||||| |||| |||||| |||| ||||| |||| ||| | |||| ||||||||||||||| |
|
|
| T |
4816699 |
aacattttccaaactttaagataaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagt |
4816798 |
T |
 |
| Q |
475 |
gtttgatttgattccatcttgtatt |
499 |
Q |
| |
|
|||||||||||| |||||| |||| |
|
|
| T |
4816799 |
ctttgatttgatttcatcttatatt |
4816823 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 46342966 - 46343080
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||| ||| | ||| ||| | ||||||| ||||||||| |
|
|
| T |
46342966 |
aaactctaagataagttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgatttg |
46343065 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
46343066 |
atttcatcttgtatt |
46343080 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 19023382 - 19023321
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctaggg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| | || |||||| |||||||||| |
|
|
| T |
19023382 |
aaactttaagataagttttgttaggagacaaacaaattatatcactcatagcttagctaggg |
19023321 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 500
Target Start/End: Original strand, 5299436 - 5299551
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||| ||||| ||| ||||| |||| | | | |||| |||||||||||| | || ||||| |
|
|
| T |
5299436 |
aaactttaagataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgtcaccacgttttcaatttg |
5299535 |
T |
 |
| Q |
485 |
attccatcttgtattg |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5299536 |
attccatcttgtattg |
5299551 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 500
Target Start/End: Original strand, 46496791 - 46496906
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |||| ||| ||||| | || | | | ||| ||||||||||||| | ||| ||||| |
|
|
| T |
46496791 |
aaactttaagataggttttgttaggagacaaactaattcgatcgcacattgcttagcaaaggaggcaaatttgtatgctcgtcaccaggttttttatttg |
46496890 |
T |
 |
| Q |
485 |
attccatcttgtattg |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46496891 |
attccatcttgtattg |
46496906 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 44585846 - 44585732
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||| |||||||||||| ||||| |||| || | || ||| | ||||||||| |||||||| |
|
|
| T |
44585846 |
aaactttaagataagttttgtcaggagacagacgaatgttgtcgctcatagcttagcaagggtgttgatgttacatgtttgtcaccaagtttttgattta |
44585747 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
44585746 |
attccatcatgtatt |
44585732 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 29542205 - 29542319
Alignment:
| Q |
385 |
aaactttaagataagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatttg |
484 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||| |||||| ||| |||||||||| ||| | |||| | ||||||||||| | ||||||| | |
|
|
| T |
29542205 |
aaactttaagataaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtacgctcgtcaccatgtttttgattcg |
29542304 |
T |
 |
| Q |
485 |
attccatcttgtatt |
499 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29542305 |
attccatcttgtatt |
29542319 |
T |
 |
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