View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_19 (Length: 510)
Name: NF17755_low_19
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 46728182 - 46727701
Alignment:
| Q |
11 |
caaaggtatattttgactattcatgatatatagcaattcttgacctgtaaagatctaaaattttggattaagatgcaatgtctaatgcaatcttaggaag |
110 |
Q |
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| T |
46728182 |
caaaggtatattttgactattcatggtatatagcaattctcaacctgtaaagatttaaaattttggattaagatgtaatgtctaatgcaatcgtaggaag |
46728083 |
T |
|
| Q |
111 |
ttgttcaaaatctagtattttccaacaactcgatgttgtgtctattccttaacaacccactaaaattttcgttgtgaacatcacaatcatgaacaaatac |
210 |
Q |
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||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46728082 |
ttgttcaaagtctaatattttctaacaacttgatgttgtgtctattccttaacaacccactaaaattttcgttgtgaacatcgcaatcatgaacaaatac |
46727983 |
T |
|
| Q |
211 |
aggacttgtgtgtgtattctttaaaaaataacctcataaataaaccaataacttagtttcacattaattagtttccaattgcatttgtttttctttgact |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46727982 |
aggacttgtgtgtgtattctttaaaaaataacctcataaataaaccaataacttagtttcacattaattagtttccaattgcatttgtttttcattgact |
46727883 |
T |
|
| Q |
311 |
tttccaattgcattcttgtaacaaccaacttccagctccttagtttagggtggaatcatacaatagaatgcctaaaacacttgtcaagttagatttaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46727882 |
tttccaattgcattcttgtaacaaccaacttccagctctttagtttagggtggaatcata----tgaatgcctaaaacacttgtcaagttagatttaaat |
46727787 |
T |
|
| Q |
411 |
ttgttataatgtacaaatc--aattatacactaatcgtgtacatatttttaagaacaaataactaactgtcctaataactaaatat |
494 |
Q |
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||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46727786 |
ttgttataacgtacaaatcaaaattatacactaatcatgtacatatttttaagaacaaataactaactgtcctaataactaaatat |
46727701 |
T |
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