View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_2 (Length: 702)
Name: NF17755_low_2
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 26 - 690
Target Start/End: Original strand, 27801038 - 27801704
Alignment:
| Q |
26 |
attgatggcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaaccacc |
125 |
Q |
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| T |
27801038 |
attgatagcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaaccacc |
27801137 |
T |
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| Q |
126 |
tttggaactcgactaccctctgt-aattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtgaac |
224 |
Q |
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| T |
27801138 |
tttggaactcgattaccctctgttaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtgaac |
27801237 |
T |
|
| Q |
225 |
cctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttcaattgacaaa |
324 |
Q |
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| T |
27801238 |
cctcatgaggttggtttgtcacaagctttagttgatcagatcttcatttttatttttgttttgctttctgttaagtaatcattattgttcaattgacaaa |
27801337 |
T |
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| Q |
325 |
tatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggccttttggcacta |
424 |
Q |
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| T |
27801338 |
tatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggccttttggcacta |
27801437 |
T |
|
| Q |
425 |
tgtagttgggttttcaaatctgtccggttttaccattttttccaatagaaaataattttacaccaacgttgcattacacgcttttacactccatagtttt |
524 |
Q |
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| T |
27801438 |
tgtagttgggttttcaaatctgtccgattttaccattttttccaatagaaaataattttacaccaacgttgcattacacgcttttacactccatagtttt |
27801537 |
T |
|
| Q |
525 |
taatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcgccaacttaccctatgtgctactggtactatattcagac |
624 |
Q |
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| T |
27801538 |
taatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcgccaacttaccctatgtgctactggtactatattcagac |
27801637 |
T |
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| Q |
625 |
gtgacaatgaagccgttcc-tcagctggtgagaagtttcttctcctcattccttggaatatcctatg |
690 |
Q |
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| T |
27801638 |
gtgacaatgaagccgttccttcagctggtgagaagtttcttctcctcattccttggaatatcctatg |
27801704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 680
Target Start/End: Original strand, 27770799 - 27770861
Alignment:
| Q |
618 |
ttcagacgtgacaatgaagccgttcctcagctggtgagaagtttcttctcctcattccttgga |
680 |
Q |
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| T |
27770799 |
ttcagacataacaatgaatccgttgctcagctggtgagaagttgcttcacatcattccttgga |
27770861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 115 - 416
Target Start/End: Complemental strand, 26475135 - 26474834
Alignment:
| Q |
115 |
tccaaaccacctttggaactcgactaccctctgtaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagca |
214 |
Q |
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| T |
26475135 |
tccaaacaacatttggaactcgtctacctgcggttattggaggatcctacacttttgtgccaacaactatttcaattattttggctggtagatatagtga |
26475036 |
T |
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| Q |
215 |
cattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttc |
314 |
Q |
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| T |
26475035 |
cattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttcatttttatttttgttttgttttctattatgtaatcattgttgtct |
26474936 |
T |
|
| Q |
315 |
aattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattcttggctttagtggcct |
414 |
Q |
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|||||||||||||||||| ||||| || |||||||||||| ||||| ||||||||||||| ||||| | || |||||| |||||||||||||||| || |
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| T |
26474935 |
aattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaaattgttcttggctttagtggact |
26474836 |
T |
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| Q |
415 |
tt |
416 |
Q |
| |
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|| |
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|
| T |
26474835 |
tt |
26474834 |
T |
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