View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_20 (Length: 508)
Name: NF17755_low_20
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 39790264 - 39789764
Alignment:
| Q |
1 |
ttacctcctcctctgcagccaccacctatgccatcaccaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790264 |
ttacctcctcctctgcagccaccacctatgccatcaccaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccct |
39790165 |
T |
|
| Q |
101 |
cctcatcaaaactcaccctgcaaactctatccacttcttcactctgcatcattctattcatcacactgaactcatcatagctttcttcatcttcaatatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39790164 |
cctcatcaaaactcaccctgcaaactctatccacttcttcactctgcatcattctattcatcacactgaactcatcatagccttcttcatcttcaatatc |
39790065 |
T |
|
| Q |
201 |
actttcttccacatcttcctcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790064 |
actttcttccacatcttcctcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagct |
39789965 |
T |
|
| Q |
301 |
gaatacctcttagaagaagagtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39789964 |
gaatacctcttagaagaagagtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaa |
39789865 |
T |
|
| Q |
401 |
ctcttctaaaccctttgttttgactttcaaggtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatg |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39789864 |
ctcttctaaaccctttgttttgtctttcaaggtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatg |
39789765 |
T |
|
| Q |
501 |
t |
501 |
Q |
| |
|
| |
|
|
| T |
39789764 |
t |
39789764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 220 - 494
Target Start/End: Original strand, 39411722 - 39411978
Alignment:
| Q |
220 |
tcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaag |
319 |
Q |
| |
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||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||| |||||||||| |
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| T |
39411722 |
tcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctctttgt---ctcactgaataccttttagaagaag |
39411818 |
T |
|
| Q |
320 |
agtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaa---acccttt |
416 |
Q |
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||||||||| ||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
39411819 |
agtccatat------------------tgttgttacaattagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaacccttt |
39411900 |
T |
|
| Q |
417 |
gttttgactttcaaggtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatg |
494 |
Q |
| |
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|||||| |||||||| ||||||||||| || ||||||||||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
39411901 |
gttttgtctttcaagatcagaaatggaaggagaaattggagaagaagtgcatgagagtttgtgattgtgatgatgatg |
39411978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 39411547 - 39411631
Alignment:
| Q |
48 |
atcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatcc |
132 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||| ||||| || |||||||||| |||||||||||||| ||||||||||| |
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| T |
39411547 |
atcaacaccaagtccctttgcaagatacatttctttattaccaacctttccctcctcaccaaaactcaccctgaaaactctatcc |
39411631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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