View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_23 (Length: 487)
Name: NF17755_low_23
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 474
Target Start/End: Complemental strand, 52578595 - 52578140
Alignment:
| Q |
21 |
atcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattccacttcannnnnnnnn |
120 |
Q |
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| T |
52578595 |
atcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattctacttcattttttttt |
52578496 |
T |
|
| Q |
121 |
nn---aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaataaatcatgccacataaattcaaagg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52578495 |
tttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaataaatcatgccacataaattcaaagg |
52578397 |
T |
|
| Q |
218 |
ttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578396 |
ttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatgga |
52578297 |
T |
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| Q |
318 |
tagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatat |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578296 |
tagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatat |
52578197 |
T |
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| Q |
418 |
attttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578196 |
attttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
52578140 |
T |
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