View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_25 (Length: 445)
Name: NF17755_low_25
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 13388102 - 13388526
Alignment:
| Q |
20 |
tcaatcaaaaatatttattattcnnnnnnnattacttatgtagttggggaaatgccaaacaacatattttggaatactattaaaaagaaaattgacaaaa |
119 |
Q |
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| T |
13388102 |
tcaatcaaaaatatttattattccttttttattacctatctagttggggaaatgccaaacaacatattttggaatactattaaaaagaaaattgacaaaa |
13388201 |
T |
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| Q |
120 |
aatagtatgaattaatcacatattattgcaaaaccaaatcaaatattctattctttgctaaactttaaaatattaactattttgaggaaatatttgaagg |
219 |
Q |
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| T |
13388202 |
actagtatgaattaatcacatattattgcaaaaccaaatcaaatattctattctttgctaaactttaaaatattaactattttgaggaaatatttgaagg |
13388301 |
T |
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| Q |
220 |
aaatgaaaaacgtcactgaatatgtcaatacaagatcaaccaacccttacaacacaatgtcactataaatagtcatagctccttaattaggcttgtaata |
319 |
Q |
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| T |
13388302 |
aaatgaaaaacgtcactgaatatgtgaatacaagatcaaccaacccttacaacacaatgtcactataaatagtcatagctccttaattaggcttgtaata |
13388401 |
T |
|
| Q |
320 |
tccata-----taacaacatatatttcattgctactcacagagagcaacacaagttattcacttccttttgttcacattgaaatggcaacacaacctgaa |
414 |
Q |
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| T |
13388402 |
tccataacaattaccaacatatatttcattgctactcacaaagagcaatacaggttattcacttccttttgttcacattgaaatggcaacacaacctgaa |
13388501 |
T |
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| Q |
415 |
cttgaacatccaaacaaggcctttg |
439 |
Q |
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| T |
13388502 |
cttgaacatccaaacaaggcctttg |
13388526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 111 - 439
Target Start/End: Original strand, 13384422 - 13384738
Alignment:
| Q |
111 |
ttgacaaaaaatagtatgaattaatcacatattattgcaaaaccaaatcaaatattctattctttgctaaactttaaaatattaactattttgaggaaat |
210 |
Q |
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| T |
13384422 |
ttgataaaaaatagtatcaattaagcacacattatttcaaaaccaaatcaaatattctattcttt-ctaatcttttaaatatttactattttaaggatgt |
13384520 |
T |
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| Q |
211 |
atttgaaggaaatgaaaaacgtcactgaatatgtcaatacaagatc-aaccaacccttacaacacaatgtcactataaatagtcatagctccttaattag |
309 |
Q |
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| T |
13384521 |
atttgaagggaaaaaaaatcgtcactgaatatgtcaatacaagatcaaaccaatcctcacaacacaatgtcattataaatagccatagctcc----ttat |
13384616 |
T |
|
| Q |
310 |
gcttgtaatatccatataacaacatatatttcattgctactcac-----agagagcaacacaagttattcacttccttttgttcacattgaaatggcaac |
404 |
Q |
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| T |
13384617 |
gattgtaatatcc--atagcaa---------cattgctactcactaactagacag--acacattttattcacttccttttggtcacattgaaatggcaag |
13384703 |
T |
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| Q |
405 |
acaacctgaacttgaacatccaaacaaggcctttg |
439 |
Q |
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| T |
13384704 |
acaacctgaatttgaacatccaaacaaggcctttg |
13384738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 13392902 - 13392954
Alignment:
| Q |
387 |
tcacattgaaatggcaacacaacctgaacttgaacatccaaacaaggcctttg |
439 |
Q |
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| T |
13392902 |
tcacgttgaaatggcaacacaacctgaatttgaacatccaaacaaggcatttg |
13392954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 13407799 - 13407845
Alignment:
| Q |
391 |
attgaaatggcaacacaacctgaacttgaacatccaaacaaggcctt |
437 |
Q |
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| T |
13407799 |
attgaaatggcaacacaacctgaatttgagcatccaaagaaggcctt |
13407845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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