View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_26 (Length: 440)

Name: NF17755_low_26
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_26
NF17755_low_26
[»] chr2 (10 HSPs)
chr2 (321-432)||(17281934-17282045)
chr2 (321-432)||(1895432-1895542)
chr2 (322-432)||(1551588-1551697)
chr2 (333-432)||(17375310-17375409)
chr2 (321-405)||(3921614-3921697)
chr2 (20-85)||(17282293-17282358)
chr2 (25-85)||(1895130-1895190)
chr2 (19-85)||(1551922-1551988)
chr2 (19-85)||(3921314-3921380)
chr2 (333-365)||(34660319-34660351)
[»] chr6 (4 HSPs)
chr6 (333-432)||(20740611-20740710)
chr6 (333-429)||(21881500-21881596)
chr6 (20-85)||(20740324-20740389)
chr6 (20-69)||(21881138-21881187)
[»] chr4 (9 HSPs)
chr4 (321-432)||(47518441-47518551)
chr4 (321-432)||(53202288-53202398)
chr4 (334-432)||(23054224-23054321)
chr4 (333-431)||(6410024-6410122)
chr4 (321-383)||(34227057-34227118)
chr4 (19-85)||(53201974-53202040)
chr4 (20-85)||(47518787-47518852)
chr4 (19-78)||(34227336-34227395)
chr4 (19-85)||(23054606-23054672)
[»] chr5 (10 HSPs)
chr5 (333-432)||(18696966-18697065)
chr5 (333-432)||(7766995-7767094)
chr5 (321-402)||(41355543-41355623)
chr5 (333-427)||(27170084-27170178)
chr5 (19-80)||(1157562-1157623)
chr5 (19-79)||(7767369-7767429)
chr5 (19-66)||(7271530-7271577)
chr5 (19-85)||(18696727-18696793)
chr5 (333-365)||(6030388-6030420)
chr5 (333-363)||(38958230-38958260)
[»] chr1 (6 HSPs)
chr1 (337-432)||(34118009-34118104)
chr1 (333-405)||(34655011-34655083)
chr1 (333-405)||(39709015-39709087)
chr1 (333-432)||(11407975-11408074)
chr1 (333-403)||(26236671-26236741)
chr1 (19-85)||(34117766-34117832)
[»] chr8 (3 HSPs)
chr8 (333-432)||(10408858-10408957)
chr8 (333-421)||(5994663-5994751)
chr8 (322-430)||(6444058-6444165)
[»] chr7 (2 HSPs)
chr7 (335-432)||(3302610-3302707)
chr7 (19-85)||(39020530-39020596)
[»] chr3 (3 HSPs)
chr3 (25-85)||(43275667-43275727)
chr3 (333-365)||(18269763-18269795)
chr3 (19-68)||(18270063-18270112)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 17282045 - 17281934
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  17282045 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatcca 17281946  T
Q  421 tcaccacctatg 432  Q
    ||||||||||||    
T  17281945 tcaccacctatg 17281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 1895432 - 1895542
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 420  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |    
T  1895432 tgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaa 1895530  T
Q  421 tcaccacctatg 432  Q
    ||||||||||||    
T  1895531 tcaccacctatg 1895542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 322 - 432
Target Start/End: Complemental strand, 1551697 - 1551588
Alignment:
Q  322 gaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccat 421  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  1551697 gaagtaccacaaa-ccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccat 1551599  T
Q  422 caccacctatg 432  Q
    |||||||||||    
T  1551598 caccacctatg 1551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 17375310 - 17375409
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17375310 aaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatccatcaccacctatg 17375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 3921614 - 3921697
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  3921614 tgaagtaccacaaa-ccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17282358 - 17282293
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282358 caaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 17282293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 1895130 - 1895190
Alignment:
Q  25 accaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  1895130 accaccattagctctcctaagcaccttcatccaaaacaaacctcataaacaaccgcaaaag 1895190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 1551988 - 1551922
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||    
T  1551988 ccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcctcataaacaatcgcaaaag 1551922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 3921314 - 3921380
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| ||||||||| | |||||||||| | |||||||||||||||||||||||| ||||    
T  3921314 ccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctcataaacaaccgcaaaag 3921380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 34660319 - 34660351
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  34660319 aaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 20740611 - 20740710
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20740611 aaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatg 20740710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 21881500 - 21881596
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacct 429  Q
    ||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21881500 aaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacct 21881596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20740324 - 20740389
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||    
T  20740324 caaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaatcgcaaaag 20740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 21881138 - 21881187
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctca 69  Q
    |||| |||||| |||||||||  ||||||||||| |||||||||||||||    
T  21881138 caaacaccaccattagctctcccaagcaccttcacccaaaacacacctca 21881187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 47518551 - 47518441
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 420  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  47518551 tgaagtaccacaaa-cgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatcca 47518453  T
Q  421 tcaccacctatg 432  Q
    ||||||||||||    
T  47518452 tcaccacctatg 47518441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 53202288 - 53202398
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatcca 420  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||      
T  53202288 tgaagtaccacaaa-ccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctg 53202386  T
Q  421 tcaccacctatg 432  Q
    ||||||||||||    
T  53202387 tcaccacctatg 53202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 334 - 432
Target Start/End: Complemental strand, 23054321 - 23054224
Alignment:
Q  334 aaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||    
T  23054321 aaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagca-caccatcgtgactgatccatcaccacctatg 23054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 6410024 - 6410122
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctat 431  Q
    |||||||||||||| ||||| |||||||||||||  || ||||||||||||  |||| ||||| ||| ||||| |||||||||||||||||||||||||    
T  6410024 aaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatccatcaccacctat 6410122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 34227118 - 34227057
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaac 383  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34227118 tgaagtaccacaga-ccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 53201974 - 53202040
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  53201974 ccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaaccgcaaaag 53202040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 47518852 - 47518787
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||    
T  47518852 caaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaaccgcaaaag 47518787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34227395 - 34227336
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaacc 78  Q
    ||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  34227395 ccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctcataaacaacc 34227336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 23054672 - 23054606
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||    
T  23054672 ccaaacaccacaattagctctctcaagcaccttcatccaaaacacacctcacaaagaaccgcaaaag 23054606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 18696966 - 18697065
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18696966 aaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcaccacctatg 18697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 7767094 - 7766995
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  7767094 aaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcaccacctatg 7766995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 41355623 - 41355543
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcacc 402  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  41355623 tgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 333 - 427
Target Start/End: Complemental strand, 27170178 - 27170084
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccac 427  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||  || | | ||||||||||| ||||||||||||||||||||||||||||    
T  27170178 aaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcaccac 27170084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1157623 - 1157562
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgc 80  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1157623 ccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaacaaccgc 1157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7767429 - 7767369
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccg 79  Q
    ||||| |||||| |||||||||  ||||||||||||||||||||||||||| ||| |||||    
T  7767429 ccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccg 7767369  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 7271530 - 7271577
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacc 66  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  7271530 ccaaacaccacccttagctctctcaagcaccttcatccaaaacacacc 7271577  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 18696727 - 18696793
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| ||||||||||||||||  ||||||||||| || |||||||||||| ||| |||||| ||||    
T  18696727 ccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaag 18696793  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 6030420 - 6030388
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  6030420 aaaccaacacaaccaaagatccatcgaaaccat 6030388  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 38958260 - 38958230
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaacc 363  Q
    |||||||||||||||||||||||||||||||    
T  38958260 aaaccaacacaaccaaagatccatcgaaacc 38958230  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 34118009 - 34118104
Alignment:
Q  337 caacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    |||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34118009 caacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 34118104  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 34655011 - 34655083
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||| ||||||| |||| ||||||||  | |||||||||||||||||||||||||||||||||||    
T  34655011 aaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatccatcaccacc 34655083  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 39709087 - 39709015
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||||| ||||||||  ||||| |||||||||| ||||| ||||||||||||||    
T  39709087 aaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 11408074 - 11407975
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||||||||||||||||||   |||||||||||  |  |||||||| |||| | || ||||||||||||||| ||||| ||||||||||||||| ||||    
T  11408074 aaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatccatcaccacttatg 11407975  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 26236741 - 26236671
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcacca 403  Q
    |||||||| ||||||||||||||||||| |||||  || ||||||| ||||| |||| |||||||||||||    
T  26236741 aaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatccatcacca 26236671  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 34117766 - 34117832
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||| |||||||||||  |||||||||||||||||||| |||||| ||| |||||| ||||    
T  34117766 ccaaacaccaacgttagctctcccaagcaccttcatccaaaacatacctcacaaagaaccgcaaaag 34117832  T

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Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 10408858 - 10408957
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    |||||||||||||||||||| |||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10408858 aaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcaccacctatg 10408957  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 5994663 - 5994751
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccat 421  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  5994663 aaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccat 5994751  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 430
Target Start/End: Original strand, 6444058 - 6444165
Alignment:
Q  322 gaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccat 421  Q
    ||||||||||||| ||||||||| ||||||| | |||||||||||  || ||||| ||||||  | || ||||||||||||||| | |||||| ||||||    
T  6444058 gaagtaccacaaa-ccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccat 6444156  T
Q  422 caccaccta 430  Q
     ||||||||    
T  6444157 aaccaccta 6444165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 432
Target Start/End: Original strand, 3302610 - 3302707
Alignment:
Q  335 accaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatg 432  Q
    ||||| |||||||||||||||||||||| |||  |||| ||||||||| |||||||||||  |||||||||||||||| ||||| |||||||||||||    
T  3302610 accaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcaccacctatg 3302707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 39020596 - 39020530
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| |||||||||  ||||||| ||| || |||||||||||||||| |||||| ||||    
T  39020596 ccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctcataaagaaccgcaaaag 39020530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 43275667 - 43275727
Alignment:
Q  25 accaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||||| |||||||||  ||||||||||||||||||||||||||| ||| |||||| ||||    
T  43275667 accaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgcaaaag 43275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 18269795 - 18269763
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  18269795 aaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18270112 - 18270063
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctc 68  Q
    ||||| |||||| |||||||||  ||||||||||| ||||||||||||||    
T  18270112 ccaaacaccacccttagctctcccaagcaccttcacccaaaacacacctc 18270063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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