View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_3 (Length: 665)
Name: NF17755_low_3
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Original strand, 18221130 - 18221778
Alignment:
| Q |
1 |
tttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatgaaccctgcttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221130 |
tttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatgaaccctgcttggg |
18221229 |
T |
|
| Q |
101 |
aaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatg |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221230 |
aaccaaactagtagcagcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatg |
18221329 |
T |
|
| Q |
201 |
cttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgtagggattttcttcccctctggctttccaaagctttgatcgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221330 |
cttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgtagggattttcttcccctctggctttccaaagctttgatcgt |
18221429 |
T |
|
| Q |
301 |
taaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctacaagatttcaacaactagtatatgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221430 |
taaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctacaagatttcaacaactagtatatgaaa |
18221529 |
T |
|
| Q |
401 |
tgaaacccaacaaagatgacatttttagaacttcataaagtgtttgaaataaaagagagagctttttatgttatacttaaaatcaaatgaaaaagagtga |
500 |
Q |
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| T |
18221530 |
tgaaacccaacaaagatgacatttttagaacttcataaagtgtttgaaataaaagagagatctttttatgttatacttaaaatcaaatgaaaaagagtga |
18221629 |
T |
|
| Q |
501 |
gcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtaggaatgattaatctggtaaaatcgacccacttca |
600 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18221630 |
gcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtatgaatgattaatctggtaaaatcgacccacttca |
18221729 |
T |
|
| Q |
601 |
aagtccacaggagtccctgcaatatttgttcaagtttatagcaaaaagt |
649 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221730 |
aagtccacaggagtccctgcaatatttgttcaagtttatagcaaaaagt |
18221778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 499 - 643
Target Start/End: Complemental strand, 5077294 - 5077150
Alignment:
| Q |
499 |
gagcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtaggaatgattaatctggtaaaatcgacccactt |
598 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5077294 |
gagcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtaggaatgattaatttggtaaaatcgacccactt |
5077195 |
T |
|
| Q |
599 |
caaagtccacaggagtccctgcaatatttgttcaagtttatagca |
643 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
5077194 |
caaagtccacagtagtccctgcaatatttgttgaagtttatagca |
5077150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 43012845 - 43013060
Alignment:
| Q |
1 |
tttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatgaaccctgcttggg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
43012845 |
tttgctcctcatgacgccccaagaaccgaacttgttggcgttggccccactgcaccataccagtgaatttgatctcagaccaacatgaaccctgcttggg |
43012944 |
T |
|
| Q |
101 |
aaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
43012945 |
aaccaaactagtagcagcatcattgataactgggctcataggaggagagacccaaaaactccatgagtttcctttctcagcaaattcgttagctgagatg |
43013044 |
T |
|
| Q |
201 |
cttctacaaagtgttt |
216 |
Q |
| |
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|||||||| ||||||| |
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| T |
43013045 |
cttctacagagtgttt |
43013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 481 - 649
Target Start/End: Original strand, 43013438 - 43013611
Alignment:
| Q |
481 |
aatcaaatgaaaaagagtgag--cttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtaggaatgattaat |
578 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
43013438 |
aatcaaatgaaaaagagtgagagcttttttatattaccattacaaggttcacacatttgatttgaactgggcaatttggtggaagataggaatgattaat |
43013537 |
T |
|
| Q |
579 |
ctggtaaaatcgacccacttcaaagtccacaggagtccctgcaatatttgttcaag---tttatagcaaaaagt |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
43013538 |
ttggtaaaatcgacccacttcaaagtccacaggagtccctggaatatttgttgaagttttttatagcaaaaagt |
43013611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 276 - 435
Target Start/End: Original strand, 43013060 - 43013214
Alignment:
| Q |
276 |
tctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctaca |
375 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
43013060 |
tctggctttccaaagcattgatctttaaagtgagtgctaagagatttgaggcttggataccttagagatacttcctgctcccatttgtcagtgacctaca |
43013159 |
T |
|
| Q |
376 |
agatttcaacaactagtatatgaaatgaaacccaacaaagatgacatttttagaacttca |
435 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
43013160 |
agatttcaacatctagt-----aaatgaaacccaacaaagatgacattttcagaacttca |
43013214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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