View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_31 (Length: 404)
Name: NF17755_low_31
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 26626746 - 26627128
Alignment:
| Q |
18 |
cttacataccaaactagccacctcatgtagctgtagcacttccatcatttttgtataatctcaactaaacataatcatttatttaattattatgcatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26626746 |
cttacataccaaactagccacctcatctagcggtagcacttccatcatttttgtataatctcaactaaacataatcatttatttaattaatatgcatatg |
26626845 |
T |
|
| Q |
118 |
tttccatcttcaatttttctttttggactaattaacttccatcttcaacttctcaactaatctttaatgttaggttannnnnnnacgtggatttcttgct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
26626846 |
tttccatcttcaatttttctttttggactaattaacttccatcttcaacttctcaactaatctttaatgttaggttatttttttatgtggatttcttgcc |
26626945 |
T |
|
| Q |
218 |
gtaacgtaggacgtagtggtggattttgatagtttaatcttaattggatgaccgagatagtttatagctcaatttttgactgcataataaaaaccatcag |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
26626946 |
gtaac-taggacgtagtggtggattttgatagtttgatcttaattgaatggctgagatagtttatagctcaatttttaattgcataataaaaaccatcag |
26627044 |
T |
|
| Q |
318 |
atcttaaatcaacgattaaaatcgtttgccgtgtgaaactgcatgaaatgcctacatcatgcaatcatggtcccttatttccca |
401 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||| |
|
|
| T |
26627045 |
attttaaatcaacgattaaaatcgtttgccgtgtgaaactgcatgaaatgcctacatcaggcgatcctgatcccttatttccca |
26627128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University