View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_33 (Length: 390)
Name: NF17755_low_33
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 34459938 - 34459562
Alignment:
| Q |
1 |
acattaatgttggatgttgcttgattagtatagggccatatgcatatcgacttctttaagcaattgacactgtgatgaccacagaattgcatgcaattaa |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34459938 |
acattaatgttagattttgcttgattagtatagggccatatgcatatcgacttatttaagcaattgaaactgtgatgaccacagaattgcatgcaattaa |
34459839 |
T |
|
| Q |
101 |
gtcaaaagaaagataagtcttttatgttttcaagtctctccctcttcaattttgtggacttgtttagatattacaactgaaaatttaaccgtcctccctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34459838 |
gtcaaaagaaagataagtcttttatgttttcaagtctttcccttttcaattttgtggacttgtttagatattacaactgaaaatttaaccgtcctccctc |
34459739 |
T |
|
| Q |
201 |
taaatttttagggatctttgcgcctgttcattctgtgggtatttccgtgtttccttctgaagacagtgcgagaaatcattcgcatttcatatatacaaca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34459738 |
taaatttttagggatctttgcgcctgttcattctgtgggtatttccgtgtttccttctgaagacagtgcgagaaatcattcgcatttcatatatacaaca |
34459639 |
T |
|
| Q |
301 |
tgggtcgtgggggttctcgattgctatttttatagctttggttgtatcttggacatatgttagtgcaatctctctga |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34459638 |
tgggtcgtgggggttctcgattgctatttttatagctttggttgtatcttggacatatgttagtgcaatctctctga |
34459562 |
T |
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