View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_35 (Length: 386)
Name: NF17755_low_35
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 31362202 - 31362550
Alignment:
| Q |
21 |
gacaatattgattttacttttaagtttgattataagggtagcaattttatacaggcataatgatacgtatatttaatttaatggtagagtataagtatac |
120 |
Q |
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| T |
31362202 |
gacaatattgattttacttt-aagtttgattataagggtagcaattttatacaggcataatgatacgtatatttaatttaatggtagggtataagtatac |
31362300 |
T |
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| Q |
121 |
cagttaattttaataaattgtattaactgatctaactcattcacacatatacaacatcaataactaactctataagtttaatttctatatcaatgtaaat |
220 |
Q |
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| T |
31362301 |
cagttaattttaataaattgtattaactgatctaactcattcacacatatacaacatcaataactaactctataagtttaatttctatatcaatgtaaat |
31362400 |
T |
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| Q |
221 |
aactaactcaactcaaattaattagaagtgctgatagaacttcgacggaaaaagacttacattgcaacaacatggcagaagttgtcaccaggaatagagc |
320 |
Q |
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| T |
31362401 |
aactaactcaactcaaattaattagaagtgctgatagaacttcgacggaaaaagacttacattgcaacaacatggcagaagttgtcaccaggaatagagc |
31362500 |
T |
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| Q |
321 |
agtcacaggtgacattattctctacgattttcggtatgggaggtgtaaac |
370 |
Q |
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| T |
31362501 |
agtcacaggtgacattattctctacgattttcggtatgggaggcgtaaac |
31362550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 31416618 - 31416519
Alignment:
| Q |
259 |
acttcgacggaaaa-agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgattttcggtat |
357 |
Q |
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| T |
31416618 |
acttcgacgaaaaagagacttacatttcaacaacatggcagaagttgtcaccagcaacagagcagttacaaattacattgttctctacgacattcggtat |
31416519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 31294879 - 31294954
Alignment:
| Q |
273 |
agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgat |
348 |
Q |
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| T |
31294879 |
agacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgat |
31294954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 31388930 - 31388993
Alignment:
| Q |
273 |
agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacatt |
336 |
Q |
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| T |
31388930 |
agacttacattgaaacaacatggcagaagttgtcaccggcaacagagcagttgcaggtgacatt |
31388993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 31257692 - 31257766
Alignment:
| Q |
273 |
agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacga |
347 |
Q |
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| T |
31257692 |
agacttacattgaaacaacatggcagaagttgtcaccagcaacactgcagttgcaggtgacattgttcactacga |
31257766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 31309975 - 31310018
Alignment:
| Q |
265 |
acggaaaa-agacttacattgcaacaacatggcagaagttgtca |
307 |
Q |
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| T |
31309975 |
acggaaaatagacttacatttcaacaacatggcagaagttgtca |
31310018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 31283493 - 31283529
Alignment:
| Q |
273 |
agacttacattgcaacaacatggcagaagttgtcacc |
309 |
Q |
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| T |
31283493 |
agacttacatttcaacaacatggcaaaagttgtcacc |
31283529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 31376640 - 31376676
Alignment:
| Q |
273 |
agacttacattgcaacaacatggcagaagttgtcacc |
309 |
Q |
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| T |
31376640 |
agacttacatttcaacaacatggcaaaagttgtcacc |
31376676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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