View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_4 (Length: 660)
Name: NF17755_low_4
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 173 - 646
Target Start/End: Original strand, 2326660 - 2327132
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2326660 |
attttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttccgctgataagagggaggaagcaagttaaggaga |
2326759 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2326760 |
ctaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacggaagttgactgaggatgaaatggt |
2326859 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2326860 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcgaatttg-gtgaagtacccggacgttcaaag |
2326958 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2326959 |
gaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
2327058 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgt |
646 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2327059 |
tgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatgatgt |
2327132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 173 - 646
Target Start/End: Original strand, 2330375 - 2330847
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
||||||||||||||| |||||| || ||| || ||||| || |||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
2330375 |
attttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaagcatgttaaggaga |
2330474 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
||| |||||||||| ||||||||||||||| || || ||||| ||| |||||||||||||||| ||| |||| ||| |||| ||||||||||||| | |
|
|
| T |
2330475 |
gtagattgaacaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagtgaggatgaaatgat |
2330574 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
2330575 |
tagtctttgttcggagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttg-gtgaagtacccggacgttcaggg |
2330673 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
|| ||||||| ||||||||| ||||| |||||||| |||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330674 |
gaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
2330773 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgt |
646 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| |
|
|
| T |
2330774 |
tgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgaggatgt |
2330847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 218 - 625
Target Start/End: Original strand, 2350726 - 2351132
Alignment:
| Q |
218 |
gatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggagagtaaattgaacaatgctaatactgttgtttcctacgtggatacac |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||| ||||||||||| ||| |||| ||||| || |||||||| | |
|
|
| T |
2350726 |
gatcaagaagatgttttgcttccgctgattagagcgaggaagcaagttaaagagagtagattgaacaatgttaaccctgtagtttcgtatgtggatactc |
2350825 |
T |
|
| Q |
318 |
ttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttc |
417 |
Q |
| |
|
||||||||||||||||||| || |||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
2350826 |
ttttggagttggagttgcctgatgagaaacggaaattgagtgaagatgaaatggttagtctttgttcagagtttttgaatgctgggatagatactacttc |
2350925 |
T |
|
| Q |
418 |
caccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgt |
517 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||| | |||||||||||||| |||||| ||||||| |
|
|
| T |
2350926 |
cacggctttgcaatggattatggcaaatttg-gtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaa |
2351024 |
T |
|
| Q |
518 |
tgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcatttt |
617 |
Q |
| |
|
|| | |||||| |||||||||||||||||| ||||| |||||| |||| |||| |||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
2351025 |
tggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataat |
2351124 |
T |
|
| Q |
618 |
gtgttgcc |
625 |
Q |
| |
|
|||||||| |
|
|
| T |
2351125 |
gtgttgcc |
2351132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 173 - 625
Target Start/End: Original strand, 2303105 - 2303556
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
|||||||||||||| |||| |||| || |||| ||| | || |||||||| |||||| | |||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
2303105 |
attttgttgcgtaaccgatggaaggagtttttgaagttacttaaggatcaagaggatgttctacttccgctgataagagcgaggaaacaagttaaggaga |
2303204 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || | ||||| ||| | |||||||||||||| ||| |||| ||||||| |||| |||||||||| |
|
|
| T |
2303205 |
gtaaattgaacaatgttaatactgttgtttcgtatgcagatactcttctagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggt |
2303304 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
|| ||||||||| |||||| |||||| ||| || |||||||||||||| ||||||| ||||||||||| |||||| || |||||||| || || || || |
|
|
| T |
2303305 |
taatctttgttcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaatttggtt-aagtacccagaagtgcagag |
2303403 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||| || | ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2303404 |
gaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggagagaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaa |
2303503 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcc |
625 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
2303504 |
tgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgcc |
2303556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 173 - 623
Target Start/End: Original strand, 2320806 - 2321256
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
|||||||||||||| ||||||||| || |||| ||| | || |||||||| |||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2320806 |
attttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggaga |
2320905 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
||||||||||||||| |||||| |||||||| || | ||||| ||||| |||||||||||||| ||| |||| ||||||| |||| |||||||||| |
|
|
| T |
2320906 |
gtaaattgaacaatgataatacagttgtttcgtatgcagatactcttttagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggt |
2321005 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
|| ||||||||||||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||| || || | |
|
|
| T |
2321006 |
taatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttg-gtgaagtacccggaagtgcaggg |
2321104 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
|||||||||| |||||||| | ||||| |||| | |||||| || | ||||||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
2321105 |
gaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaag |
2321204 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatccacca-gggcattttgtgttg |
623 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
2321205 |
tgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttg |
2321256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 173 - 607
Target Start/End: Original strand, 2293492 - 2293925
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| ||| | || |||||||| |||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2293492 |
attttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggaga |
2293591 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || | ||||| || || ||||| |||| ||| ||| |||| |||| ||| |||| |||||||||| |
|
|
| T |
2293592 |
gtaaattgaacaatattaatactgttgtttcatatgcagatactctcttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggt |
2293691 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
|| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||||| ||||||||||| ||| | | |||||||||| || || || | |
|
|
| T |
2293692 |
taatctttgttcagagtttttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgt-agtgaagtacccagaagtgcaggg |
2293790 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2293791 |
gaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaag |
2293890 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatccacc |
607 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
2293891 |
tgtgtggttttggaagggttgaggcgtcatccacc |
2293925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 173 - 605
Target Start/End: Original strand, 2309823 - 2310254
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
||||||| |||||| |||||||||| || |||| ||| | || |||||||| |||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2309823 |
attttgtcgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggaga |
2309922 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || | ||||| ||||| ||||| |||| ||| ||| |||| |||| ||| |||| |||||||||| |
|
|
| T |
2309923 |
gtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagagtagcctgaggagaaacggaagctgagtgagaatgaaatggt |
2310022 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaag |
472 |
Q |
| |
|
|| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||| | ||||||||||| ||| || |||||||||| || || | | |
|
|
| T |
2310023 |
taatctttgttcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcgaatgtg-gtgaagtacccagaagtgaaggg |
2310121 |
T |
|
| Q |
473 |
gaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaag |
572 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||| || | ||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
2310122 |
gaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgcagaaactttggtatttgaag |
2310221 |
T |
|
| Q |
573 |
tgtgtggttttggaagggttaaggcgtcatcca |
605 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
2310222 |
tgtgtggttttggaagggttgaggcgtcatcca |
2310254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 2326400 - 2326548
Alignment:
| Q |
18 |
ccaagatcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2326400 |
ccaagatcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaattgcatcagaatctacagattatgttacagttat |
2326499 |
T |
|
| Q |
118 |
tccacactttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2326500 |
tccacactttcattatgctatgttctgtttacttgtttttatgtgtttt |
2326548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 2330117 - 2330263
Alignment:
| Q |
20 |
aagatcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||| |||||| || || |
|
|
| T |
2330117 |
aagatcaaatcattctctgaaattcggaagtgggttctgcagactctcatcaaccgtctcaaaactgcatcggaatctgaggattctgttacggtcgttt |
2330216 |
T |
|
| Q |
120 |
cacactttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
| ||||||| ||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
2330217 |
ctcactttcgttatgctgtattttgtttacttgtttttatgtgtttt |
2330263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 2302852 - 2302993
Alignment:
| Q |
25 |
caaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacac |
124 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| || ||| || | | | |
|
|
| T |
2302852 |
caaatcgttctcagaaattcggaagtgggtgttacacactctcatcaaccgtctcaaaaccgcatcggaatctgcagattctgtcacggttgtttctccc |
2302951 |
T |
|
| Q |
125 |
tttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||| |||||||||||| | || |||||||||||||||||| |
|
|
| T |
2302952 |
tttcgttatgctatgtttagcttacttgtttttatgtgtttt |
2302993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 2320553 - 2320694
Alignment:
| Q |
25 |
caaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacac |
124 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| | |||| || || | ||| |
|
|
| T |
2320553 |
caaatcgttctcagaaattcggaagtgggtcttacacactctcatcaaccgtctcaaaactgcatcggaatctgaggattctattacggtcgtttctcac |
2320652 |
T |
|
| Q |
125 |
tttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||| ||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
2320653 |
tttcgttatgctgtattttgtttacttgtttttatgtgtttt |
2320694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 2350417 - 2350569
Alignment:
| Q |
20 |
aagatcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaat------ctacagattatgttacag |
113 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||| | | |||||| ||| || |
|
|
| T |
2350417 |
aagatcaaatctttctcagaaatccgtaagtgggtcctacacactctcatcaaccgtctcaaaactgcatccgaattggaaacagctgattatattaaag |
2350516 |
T |
|
| Q |
114 |
ttattccacactttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2350517 |
ttatgccacacttcaactatgctatgttctgtttacttgttttcatgtgtttt |
2350569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 2293232 - 2293380
Alignment:
| Q |
24 |
tcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatc------tacagattatgttacagttat |
117 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| || |||| | ||| ||||| |
|
|
| T |
2293232 |
tcaaatcgttctcagaaattcggaagtgggtcttacgcactctcatcaatcgtctcaaaactgcatcagaatcggaactaacggattctattaaggttat |
2293331 |
T |
|
| Q |
118 |
tccacactttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||||||| | ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2293332 |
gccacacttcaaatatgctatgttctctttacttgtttttatgtgtttt |
2293380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 2309563 - 2309711
Alignment:
| Q |
24 |
tcaaatcattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaat------ctacagattatgttacagttat |
117 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | || |||| | ||| ||||| |
|
|
| T |
2309563 |
tcaaatcgttctcagaaattcagaagtgggtcttacgcactctcatcaaccgtctcaaaactgcatcagaatcggaaccaacggattctattaaggttat |
2309662 |
T |
|
| Q |
118 |
tccacactttcattatgctatgttctgtttgcttgtttttatgtgtttt |
166 |
Q |
| |
|
|||||||| | ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2309663 |
gccacacttcaaatatgctatgttctctttacttgtttttatgtgtttt |
2309711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 173 - 408
Target Start/End: Original strand, 41126687 - 41126919
Alignment:
| Q |
173 |
attttgttgcgtaaaaaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttcagctgataagagggaggaagcaagttaaggaga |
272 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| |||||| | |||||||||||||||| | |||| ||| ||||||| ||||||| ||| ||||| | |
|
|
| T |
41126687 |
attttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaaggaaa |
41126786 |
T |
|
| Q |
273 |
gtaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggt |
372 |
Q |
| |
|
| | ||||| ||| || | |||||||||||| | ||||| |||||||| ||||||||||| ||| |||| ||| ||| ||| ||||||||||| |
|
|
| T |
41126787 |
ggagattgagcaaa---aacaatgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatggt |
41126883 |
T |
|
| Q |
373 |
tagtctttgttcggagtttttgaatgctggtacaga |
408 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
41126884 |
cagcctttgttcagagtttttgaatgctggcacaga |
41126919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 631
Target Start/End: Original strand, 41127042 - 41127144
Alignment:
| Q |
529 |
aggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctca |
628 |
Q |
| |
|
||||| | ||||||||||||||||| || || | ||| | ||||||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| || |
|
|
| T |
41127042 |
aggaaattaaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgcccca |
41127141 |
T |
|
| Q |
629 |
tgc |
631 |
Q |
| |
|
||| |
|
|
| T |
41127142 |
tgc |
41127144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 604
Target Start/End: Original strand, 26494607 - 26494681
Alignment:
| Q |
530 |
ggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatcc |
604 |
Q |
| |
|
|||||||| ||||||||| ||| | ||| | | ||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
26494607 |
ggaagtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc |
26494681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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