View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_40 (Length: 358)
Name: NF17755_low_40
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 5216216 - 5216550
Alignment:
| Q |
1 |
agaaaatcaaattttctttgatccatttctttctcaaa-ccaaaacctaaggtataatttctttgtaatttcagatattttcannnnnnnnnncttctgt |
99 |
Q |
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| T |
5216216 |
agaaaatcaagttttctttgatccatttctttctcaaaaccaaaacctaaggtataatttctttgtaattttagatattttcattttttttt-cttctgt |
5216314 |
T |
|
| Q |
100 |
tatgaattctatagaagttt-----------aagttggttgttcaaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcgg |
188 |
Q |
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| T |
5216315 |
tatgaattctatagaagtttctgaaacgaccaagttggttgttcaaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcgg |
5216414 |
T |
|
| Q |
189 |
gtttctgtttcatcgcttaggaaacaagataacggcttcattcgttcctataattatccatattgtttcacgttattatactttgaatatttcaaaacta |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5216415 |
gtttctgtttcattgcttaggaaacaagataacggcttcattcgttcctataattatgcatattgtttcacgttattatactttgaatatttcaaaacta |
5216514 |
T |
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| Q |
289 |
tgtacagcctgtgattatgtgaatctgtattctttc |
324 |
Q |
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|||||||||||||||||||||||||| |||| |||| |
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| T |
5216515 |
tgtacagcctgtgattatgtgaatctttattgtttc |
5216550 |
T |
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