View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_43 (Length: 353)

Name: NF17755_low_43
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_43
NF17755_low_43
[»] scaffold0051 (5 HSPs)
scaffold0051 (25-335)||(799-1109)
scaffold0051 (25-335)||(3676-3986)
scaffold0051 (25-335)||(7849-8157)
scaffold0051 (25-335)||(6866-7174)
scaffold0051 (25-279)||(8521-8775)
[»] chr8 (3 HSPs)
chr8 (232-330)||(79727-79823)
chr8 (230-329)||(26772756-26772852)
chr8 (230-266)||(6943608-6943644)
[»] chr3 (2 HSPs)
chr3 (292-330)||(27197182-27197220)
chr3 (287-331)||(49183616-49183660)
[»] chr7 (2 HSPs)
chr7 (230-330)||(38505448-38505545)
chr7 (287-330)||(30080896-30080939)
[»] chr2 (3 HSPs)
chr2 (287-330)||(4003352-4003395)
chr2 (287-330)||(30072522-30072565)
chr2 (287-330)||(31082740-31082783)
[»] chr6 (2 HSPs)
chr6 (287-329)||(33590442-33590484)
chr6 (228-261)||(26683221-26683254)


Alignment Details
Target: scaffold0051 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 1109 - 799
Alignment:
Q  25 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 124  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1109 aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 1010  T
Q  125 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatgtcaatttgatctttcattcatttagaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1009 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatctcaatttgatctttcattcatttagaag 910  T
Q  225 attccttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggagg 324  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||       ||||||||||||| ||||||||||||||||||||||||    
T  909 attccttaggctttgattgcgagtttgaagggaaagggagaggggaaggcttgagaaaaaaaggaacgagcaagcagaaaaaatagaggaaaatgggagg 810  T
Q  325 ggagggaattg 335  Q
    |||||||||||    
T  809 ggagggaattg 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 3986 - 3676
Alignment:
Q  25 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 124  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3986 aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 3887  T
Q  125 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatgtcaatttgatctttcattcatttagaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3886 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatctcaatttgatctttcattcatttagaag 3787  T
Q  225 attccttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggagg 324  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||       ||||||||||||| ||||||||||||||||||||||||    
T  3786 attccttaggctttgattgcgagtttgaagggaaagggagaggggaaggcttgagaaaaaaaggaacgagcaagcagaaaaaatagaggaaaatgggagg 3687  T
Q  325 ggagggaattg 335  Q
    |||||||||||    
T  3686 ggagggaattg 3676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 8157 - 7849
Alignment:
Q  25 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8157 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaatttattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 8058  T
Q  125 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatgtcaatttgatctttcattcatttagaag 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  8057 tggtcttgaatcataaatatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag 7958  T
Q  225 attccttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggagg 324  Q
    |||| |||||||||||||||||||||| || | ||||  ||| ||||| ||||||       |||||||||||||||||||||||||| |||||||||||    
T  7957 attcattaggctttgtttgcgagtttggaggggaagg--gaggggaagtcttgagaaaaaaaggaacgagcaagcggaaaaaatagagaaaaatgggagg 7860  T
Q  325 ggagggaattg 335  Q
    |||||||||||    
T  7859 ggagggaattg 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 7174 - 6866
Alignment:
Q  25 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 124  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174 aggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 7075  T
Q  125 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatgtcaatttgatctttcattcatttagaag 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  7074 tggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag 6975  T
Q  225 attccttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggagg 324  Q
    |||| |||||||||||||||||||||| || | ||||  ||| ||||| ||||||       |||||||||||||||||||||||||| |||||||||||    
T  6974 attcattaggctttgtttgcgagtttggaggggaagg--gaggggaagtcttgagaaaaaaaggaacgagcaagcggaaaaaatagagaaaaatgggagg 6877  T
Q  325 ggagggaattg 335  Q
    |||||||||||    
T  6876 ggagggaattg 6866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 8775 - 8521
Alignment:
Q  25 aggtatatggaaatttcctactagagctatgaatgatattgcaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 124  Q
    ||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8775 aggtacatgtaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagttta 8676  T
Q  125 tggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagattttgatgtcaatttgatctttcattcatttagaag 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  8675 tggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaacaagattttgatgtcaatttgatatttcattcatttagaag 8576  T
Q  225 attccttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgag 279  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  8575 attccttaggctttgattgcgagtttgaagggaaagggagaggggaaggcttgag 8521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 79823 - 79727
Alignment:
Q  232 aggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    |||||||||||||||||||| || | ||||||| |  ||||||||| |       |||||||||||| |||| ||||||||||||||||||||||||||    
T  79823 aggctttgtttgcgagtttggaggggaagggaggg--gaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggaggg 79727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 26772852 - 26772756
Alignment:
Q  230 ttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggaggggagg 329  Q
    |||||||||||||||||||||| || |||||||  |||||||||||| ||       |||| ||||||| |||| ||||||| ||||||||||| |||||    
T  26772852 ttaggctttgtttgcgagtttggagggaaaggg--agaggaaggctt-aggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagg 26772756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 6943644 - 6943608
Alignment:
Q  230 ttaggctttgtttgcgagtttgaagagaaagggagag 266  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  6943644 ttaggttttgtttgcgagtttgaagaggaagggagag 6943608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 27197182 - 27197220
Alignment:
Q  292 gagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  27197182 gagcaaggggaaaaaatagaggaaaatgggaggggaggg 27197220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 49183616 - 49183660
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggga 331  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||    
T  49183616 ggaatgagcaagtggaagaaatagagaaaaatgggaggggaggga 49183660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 38505545 - 38505448
Alignment:
Q  230 ttaggctttgtttgcgagtttgaagagaaagggagagaggaaggcttgagnnnnnnnggaacgagcaagcggaaaaaatagaggaaaatgggaggggagg 329  Q
    |||||||||||||||||||||| || | ||||||| |  ||||||||| |       |||| ||||||| |||| |||||||||||||||||||||||||    
T  38505545 ttaggctttgtttgcgagtttggaggggaagggaggg--gaaggcttg-ggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagg 38505449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 30080896 - 30080939
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  30080896 ggaaggagcaagtggaagaaatagaggaaaatgggaggggaggg 30080939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 4003352 - 4003395
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  4003352 ggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 4003395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 30072565 - 30072522
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  30072565 ggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 30072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 31082740 - 31082783
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggaggg 330  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 31082783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 33590484 - 33590442
Alignment:
Q  287 ggaacgagcaagcggaaaaaatagaggaaaatgggaggggagg 329  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  33590484 ggaatgagcaagtgaaaaaaatagaggaaaatgggaggggagg 33590442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 26683221 - 26683254
Alignment:
Q  228 ccttaggctttgtttgcgagtttgaagagaaagg 261  Q
    ||||||||||||||| ||||||||||||||||||    
T  26683221 ccttaggctttgtttacgagtttgaagagaaagg 26683254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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