View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_49 (Length: 320)
Name: NF17755_low_49
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41659457 - 41659760
Alignment:
| Q |
1 |
attgagttgacgtttggtgttaaatcggttttaaaccattccaacatgtaaatcgagtggttgttgtaccatacatatcagcccctatatagttatattt |
100 |
Q |
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| T |
41659457 |
attgagttgacgtttggtgttaaatcggtgttaaaccattccaacatgtaaatcgagtggttgttgtaccatatatatcagccccc-tatagttatatt- |
41659554 |
T |
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| Q |
101 |
aataatactaattgattataacttataataaatcacgaaatcaaagtctgattaacataacatgattggttcaattgtcatgtcctctatgttcttactt |
200 |
Q |
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| T |
41659555 |
actaatactaattgattataacttataataaatcacgaaatcaaagtttgattaacataacatgattggttcaattgttatgtcctctatgttcttactt |
41659654 |
T |
|
| Q |
201 |
cttatagctaagctattagctaatacagaaaagttggtaacctttctccactttcgtctataaatttagttctactcttgtagctgtggccctgctcgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41659655 |
cttatagctaagctattagctaatacagaaaagttggtaacctttctccactttcgtctataaatttacttctactcttgtagctgtggccctgctcgat |
41659754 |
T |
|
| Q |
301 |
aatact |
306 |
Q |
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|||||| |
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| T |
41659755 |
aatact |
41659760 |
T |
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