View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_5 (Length: 652)

Name: NF17755_low_5
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_5
NF17755_low_5
[»] chr1 (1 HSPs)
chr1 (10-634)||(29071817-29072443)


Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 10 - 634
Target Start/End: Original strand, 29071817 - 29072443
Alignment:
Q  10 tccaagaatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtct 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29071817 tccaaaaatatgaaatagacccttgaaaaatctcttactaagagaccctcaccagatgtgtttttactagtacttgtactacggacagcacacaaagtct 29071916  T
Q  110 tgccctcaccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29071917 tgccctcaccattaatggaggttaccatcaaatccttaacgtcttattcttttgttgctaagcatatgtttacataccgggacattctaaacaggtctct 29072016  T
Q  210 aaaaagtttcatagatagacccttatcactcttagtagaat--gaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcacca 307  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29072017 aaaaagtttcatagatagacccttatcactcttagtagaatatgaatggtgaactattaaccgtgcaaggttaaaaatgttgggagtgtttgtttcaccg 29072116  T
Q  308 acttcttacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataattgttgccacatcgaaacgatgatagcttttagccaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072117 acttcttacttttttgattcaaacaaaccaaatgaaactcgttaaaatggttcccccataattgttgccacatcgaaacgatgatagcttttagccaaaa 29072216  T
Q  408 tggttgtactccagctcagtagctctctaaccctaggccaagattctgatagcaaacaaacagtttctaattgtaaaaatagctatgaacaagggtcgct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072217 tggttgtactccagctcagtagctctctaaccctaggccaagattctgatagcaaacaaacagtttctaattgtaaaaatagctatgaacaagggtcgct 29072316  T
Q  508 tttcatcaattgtctgatattgtcgatttttgttttaagaacaaatttaggttgaggttttccttttatatttaaaaatatgataaaatcaaacaatggc 607  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29072317 tttcatcaaatgtctgatattgtcgatttttgttttaagaacaaatttaggttgaggttttccttttatatttaaaaatatgataaaatcaaacaatggc 29072416  T
Q  608 attcacattaatctatttgagcacact 634  Q
    |||||||||||||||||||||||||||    
T  29072417 attcacattaatctatttgagcacact 29072443  T

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