View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_51 (Length: 312)

Name: NF17755_low_51
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_51
NF17755_low_51
[»] scaffold0028 (1 HSPs)
scaffold0028 (16-300)||(122763-123046)


Alignment Details
Target: scaffold0028 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 122763 - 123046
Alignment:
Q  16 gtataatctggcatttgggacaaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatacataagaatacattttatatgat 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  122763 gtataatctggcatttgggacgaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatatgtaagaatacattttatatgat 122862  T
Q  116 gtaaaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgatccttctnnnnnnnnttaaaagattgtcttagtaacata 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  122863 gt-aaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgatccttctaaaaaaaattaaaagattgtcttagtaacata 122961  T
Q  216 tttagaattggtatgttgacaaatgtttgttgcaacatagatgtatgactcattgtaaaaggaatactttccagtacctatgcta 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  122962 tttagaattggtatgttgacaaatgtttgttgtaacatagatgtatgactcattgtaaaaggaatactttccagtacctctgcta 123046  T

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