View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_52 (Length: 309)
Name: NF17755_low_52
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 51390289 - 51390544
Alignment:
| Q |
20 |
cttagtggtatacttgctggacttgtgtatttgagattcagacgaaatttctcgggttcaaatccgttgaattctattgttaggggttttaattctattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51390289 |
cttagtggtatacttgctggacttgtgtatttgagattcagacgaaatttctcgggttcaaatccgttgaat---------------------tctattg |
51390367 |
T |
|
| Q |
120 |
ttagggggtttaattctgtgttgaattggcctgtgaagttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaactgtcggccg |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51390368 |
ttaggggttttaattctgtgttgaattggcctgtgaagttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaactgtcggccg |
51390467 |
T |
|
| Q |
220 |
tacggggaggaatgctgcccgggttgctgctgattggagatgtcaggcttgtacttatgataattctggtttgatga |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51390468 |
tacggggaggaatgctgcccaggttgctgctgattggagatgtcaggcttgtacttatgataattctggtttgatga |
51390544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University