View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_54 (Length: 298)

Name: NF17755_low_54

Description: NF17755

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17755_low_54

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 113; E-Value: 3e-57

Query Start/End: Original strand, 19 - 135

Target Start/End: Original strand, 48769372 - 48769488

Alignment:

Q	19	aaaaccttcaaaaatattctttagcggtggcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagacaaaaataca	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	48769372	aaaaccttcaaaaatattctttagcggtggcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagacaaaagtaca	48769471	T

Q	119	aaatcaggctatatatt	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48769472	aaatcaggctatatatt	48769488	T

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Target: chr3; HSP #2

Raw Score: 91; E-Value: 4e-44

Query Start/End: Original strand, 198 - 296

Target Start/End: Original strand, 48769484 - 48769581

Alignment:

Q	198	atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaatattcttcgacat	296	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	48769484	atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaatatt-ttcgacat	48769581	T

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