View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_55 (Length: 298)
Name: NF17755_low_55
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 25920155 - 25920015
Alignment:
| Q |
148 |
tgccttgcatttatatctccactaatcttaacttagatggagttgatactgatcccatcttttctgaagtcaccactgctatctccacaatcattggaaa |
247 |
Q |
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| T |
25920155 |
tgccttgcatttacatctccactaatcttaacttagatggagttgacactgatccaatcttttctgaagtcaccactgctatctccacaatcattggaaa |
25920056 |
T |
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| Q |
248 |
accagaaaaggtattcatatatctctcactctttccctttg |
288 |
Q |
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| T |
25920055 |
accagaaaaggtattcatatatctctcactctttctctttg |
25920015 |
T |
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Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 25920301 - 25920205
Alignment:
| Q |
17 |
cattcaaggagtaagaagatgcataagaaaggttgaaccaaccaagtcaacttggattccaaatcttagaatatatatagatccatccacatacctt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25920301 |
cattcaaggagtaagaagatgcaaaagaaaggttgaaccaaccaagtcaacttgggttccaaatcttagaatatatatagatccatccacatacctt |
25920205 |
T |
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