View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_58 (Length: 288)
Name: NF17755_low_58
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 40537797 - 40538062
Alignment:
| Q |
1 |
ctttaattttccactccaaagctaacaatctacgaattttttggatgagtcgccaaccaacaagacttccatccttatgaaactgcaatgtatgcactac |
100 |
Q |
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| T |
40537797 |
ctttaattttccactccaaagctaacaatctacgaattttttggatgagtcaccaaccaacaagacttccatccttccgaaactgcaatgtatgcactat |
40537896 |
T |
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| Q |
101 |
catactagaatcaacatgtagctccacnnnnnnnnnnngaaagaaatgtagctccacctttgaaaaacctttatctctaacgatttgaagatcgtaaaga |
200 |
Q |
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| T |
40537897 |
cacactggaatcaacatgtagctccac---ttttttttgaaagaaatgtagctccacctttgaaaaacctctatctctaacgatttgaagattgtaaagg |
40537993 |
T |
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| Q |
201 |
attcccaaaaactcaactctatacacactgcatcgacccaaaattcgagagtgaccttcaagctacttc |
269 |
Q |
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| T |
40537994 |
atttctaaaagttcaactctatacacactgtatcgatccaaaatttgagagtgaccttcaagccacttc |
40538062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 1581140 - 1581074
Alignment:
| Q |
11 |
ccactccaaagctaacaatctacgaattttttggatgagtcgccaaccaacaagacttccatcctta |
77 |
Q |
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| T |
1581140 |
ccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatcctta |
1581074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 3663770 - 3663832
Alignment:
| Q |
11 |
ccactccaaagctaacaatctacgaattttttggatgagtcgccaaccaacaagacttccatc |
73 |
Q |
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| T |
3663770 |
ccactccaaagcaagcaatcggcgaatttcttgaatgagacgccaaccaacaacacttccatc |
3663832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 9259566 - 9259610
Alignment:
| Q |
33 |
cgaattttttggatgagtcgccaaccaacaagacttccatcctta |
77 |
Q |
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| T |
9259566 |
cgaatttcttgaatgagacgccaaccaacaacacttccatcctta |
9259610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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