View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_60 (Length: 268)
Name: NF17755_low_60
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 32931563 - 32931325
Alignment:
| Q |
20 |
gaacggaatagcataatttttaaaaataagacaactttatcccatctgtttatggataaaattaagctgcnnnnnnncgg-tggctgaaaacaaaatatg |
118 |
Q |
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|||| |||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||||||| | | || ||||||| |||||||| |
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| T |
32931563 |
gaacagaatagcagaatttttaaaaataagacaacttcattccatccgcttatggataaaattaagctgttttttttccgatgcctgaaaataaaatatg |
32931464 |
T |
|
| Q |
119 |
ttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaatttttccttttgtgtttcttgtcggtctctttatc |
218 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32931463 |
ttatttttatttttgattatcatagttggtggcttattccttttgtttgtcttgccattggttaatttttccttttgtgtttattgtcggtctctttatc |
32931364 |
T |
|
| Q |
219 |
ccgttgctagtgttgtctacactttagtgttcttctctg |
257 |
Q |
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| T |
32931363 |
ccgttgctagtgttgtctacactttattgttcttctctg |
32931325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 21215901 - 21215796
Alignment:
| Q |
110 |
caaaatatgttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaatttttccttttgtgtttcttgtcggt |
209 |
Q |
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|||||||||||| ||||| ||||| |||| ||||||||||| || ||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
21215901 |
caaaatatgttaattttgcttttggctatcatagttggtggatttctccttttgtttgttttggcattgattaatttttcc--ttgtgttttttgtcggt |
21215804 |
T |
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| Q |
210 |
ctctttat |
217 |
Q |
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|||||||| |
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| T |
21215803 |
ctctttat |
21215796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 32152968 - 32152860
Alignment:
| Q |
99 |
gtggctgaaaacaaaatatgttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaattt-ttccttttgtg |
197 |
Q |
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| T |
32152968 |
gtggctgaagacaaaatatgctaatattgcttttgattatcgtagttggtggctttgtccttttgtttgtttggccatgggttaatttactccttttgtg |
32152869 |
T |
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| Q |
198 |
tttcttgtc |
206 |
Q |
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||| ||||| |
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| T |
32152868 |
ttttttgtc |
32152860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 36564970 - 36565083
Alignment:
| Q |
104 |
tgaaaacaaaatatgttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaatttttccttttgtgtttctt |
203 |
Q |
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|||||||||||||||||| |||| |||| ||| ||||||| |||||| ||||||||||||| ||| |||||||||||||| | |||||||| || |
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| T |
36564970 |
tgaaaacaaaatatgttaactttgctttttgttatcatagttgatggctttctccttttgtttgtcttgaaattggttaattttt--tcttgtgtttttt |
36565067 |
T |
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| Q |
204 |
gtcggtctctttatcc |
219 |
Q |
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| T |
36565068 |
gccggtctctttatcc |
36565083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 36543353 - 36543240
Alignment:
| Q |
104 |
tgaaaacaaaatatgttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaatttttccttttgtgtttctt |
203 |
Q |
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||||||||||| |||||| |||| |||| ||| ||||||| |||||| ||||||||||||| ||| |||||||||||||| | |||||||| || |
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| T |
36543353 |
tgaaaacaaaacatgttaactttgctttttgttatcatagttgatggctttctccttttgtttgtcttgaaattggttaattttt--tcttgtgtttttt |
36543256 |
T |
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| Q |
204 |
gtcggtctctttatcc |
219 |
Q |
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| |||||||||||||| |
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| T |
36543255 |
gccggtctctttatcc |
36543240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 19534069 - 19534165
Alignment:
| Q |
111 |
aaaatatgttatttttgtttttgactattatagttggtggcttattccttttgtttgtattgccattggttaattt-ttccttttgtgtttcttgtc |
206 |
Q |
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||||||||||| | |||||||||| |||| ||||| |||||| ||||||||||||| | | ||| ||| ||||| |||||||||||||| ||||| |
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| T |
19534069 |
aaaatatgttaatattgtttttgattattgtagttaatggctttgtccttttgtttgtttggacataggtaaatttattccttttgtgttttttgtc |
19534165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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