View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_61 (Length: 267)
Name: NF17755_low_61
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 32063743 - 32063985
Alignment:
| Q |
11 |
agaaaataaggaagaagtaaatttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatcttgtctgatcattttacattttggatatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063743 |
agaaaataaggaagaagtaaatttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatcttgtctgatcattttacattttggatatga |
32063842 |
T |
|
| Q |
111 |
atggattagacagacactggaactttcaaggcctctaatatcttatcatctagctcaaatttgattggcttcttgtctctcccaatctttatgtactcct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063843 |
atggattagacagacactggaactttcaaggcctctaatatcttatcatctagctcaaatttgattggcttcttgtctctcccaatctttatgtactcct |
32063942 |
T |
|
| Q |
211 |
caaaccgttcttttaggtcctcaggtaggtttgtggttgaact |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063943 |
caaaccgttcttttaggtcctcaggtaggtttgtggttgaact |
32063985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 51280084 - 51280304
Alignment:
| Q |
32 |
tttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatcttgtctgatcattttacattttggatatgaatggattagacagacactgga |
131 |
Q |
| |
|
|||||||| || ||||||||| |||||||| ||||||| |||||| |||| |||||||||||||||||||||| ||||| |||| |||||||||| ||| |
|
|
| T |
51280084 |
tttattaacacacctcatttaattcatgtaataagaaataatacaa-tcttatctgatcattttacattttggacatgaacggatcagacagacaccgga |
51280182 |
T |
|
| Q |
132 |
actttcaaggcctctaatatcttatcatctagctcaaatttgattggcttcttgtctctcccaatctttatgtactcctcaaaccgttcttttaggtcct |
231 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| || | ||||||||| |||||||||||| ||||||||||||| || ||||||||| | |
|
|
| T |
51280183 |
actttcaagacctctcatatcttatcatctagctcaaattttatggttttcttgtctttcccaatctttaggtactcctcaaactattattttaggtctt |
51280282 |
T |
|
| Q |
232 |
caggtaggtttgtggttgaact |
253 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
51280283 |
catgcaggtttgtggttgaact |
51280304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University