View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17755_low_67 (Length: 253)
Name: NF17755_low_67
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 49463344 - 49463094
Alignment:
| Q |
1 |
ctcaaaatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49463344 |
ctcataatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaact |
49463245 |
T |
|
| Q |
101 |
gctttcagaagaaaacccaccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49463244 |
gctttcagaagaaaacccaccaatctacaaagacattaccatagaagatttcttggcacattattatgcaaaaggccttgatgggaactcttccttgcag |
49463145 |
T |
|
| Q |
201 |
cccttcaagttgtgaattcaacatgtaaaggcacttttgatcctcatggag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
49463144 |
cccttcaagttgtgaattcaacatgtaaatgcaattttgatactcatggag |
49463094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 13014965 - 13015128
Alignment:
| Q |
21 |
atttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcagaagaaaacccac |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
13014965 |
atttctgtagcaagcttctttatgaattcacgtgacccaattgaaggtacgtcaaaggtttatggtcctattaatga-----------aagaaaacccac |
13015053 |
T |
|
| Q |
121 |
caatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttcct |
195 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||| ||||| | |||||||| |||| || ||||||| |
|
|
| T |
13015054 |
caatctacaaagacgttaccataaaagatttctaggcacatttttatgtagaaggccttaatggaaaatcttcct |
13015128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 1094989 - 1095227
Alignment:
| Q |
3 |
caaaatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgc |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| || |||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1094989 |
caaaacataggcccgagaatttctgtagcgagcttctttctggattctcgtgacccaattgaaggtacatcaaaggtttatggtcctattaaggagctgc |
1095088 |
T |
|
| Q |
103 |
tttcagaagaaaacccaccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcagcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||| ||||||| |||||||| |||| || ||||||||| |||| |
|
|
| T |
1095089 |
tttcagaagaaaacccaccaatctacaaagacattaccataaaagatttcttggcgcatttttatgcagaaggccttaatggaaaatcttccttggagcc |
1095188 |
T |
|
| Q |
203 |
cttcaagttgtgaattcaacatgtaaaggcacttttgat |
241 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
1095189 |
cttcaagttgtgaattcaacaagtgaatgcacttttgat |
1095227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 25221318 - 25221270
Alignment:
| Q |
79 |
tttatggtcctattaaggaactgctttcagaagaaaacccaccaatcta |
127 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||| |||||||||||||| |
|
|
| T |
25221318 |
tttatggtcctattaaagaattggtctcagaagagaacccaccaatcta |
25221270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 26173128 - 26173176
Alignment:
| Q |
79 |
tttatggtcctattaaggaactgctttcagaagaaaacccaccaatcta |
127 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||| |||||||||||||| |
|
|
| T |
26173128 |
tttatggtcctattaaagaattgttatcagaagagaacccaccaatcta |
26173176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 19891981 - 19892195
Alignment:
| Q |
12 |
ggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcagaag |
111 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
19891981 |
ggcccaagaatttcagtagcaagcttctttgtgaattctcgtgaaccaattgaaggtacatcaaaggtttatggtcctattaaggagctcctttcagaag |
19892080 |
T |
|
| Q |
112 |
aaaacccaccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagtt |
211 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
19892081 |
aaaaccctccaatctacaaagacattaccataaaagatttctttgcatattattatgcaaaaggcctagatggaaactcttccttggagcccttcaagtt |
19892180 |
T |
|
| Q |
212 |
gtgaattcaacatgt |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19892181 |
gtgaattcaacatgt |
19892195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 29464857 - 29465065
Alignment:
| Q |
18 |
agaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcagaagaaaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| ||||| | |||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
29464857 |
agaatttctgtagcaagcttctttctgaattctcgtgacccaattgaaggaacatcaaagatttatggtcctattaaggagctgatttcagaagaaaacc |
29464956 |
T |
|
| Q |
118 |
caccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtgaat |
217 |
Q |
| |
|
| ||||||||||||| || |||||||||||||| ||||||||| | || || |||||| | ||| ||| | || ||| ||||||||||||||||||| |
|
|
| T |
29464957 |
cggcaatctacaaagatattaccataaaagatttcttggcacattttcatacagaaggccgtaatgtgaaatttttgttggagcccttcaagttgtgaat |
29465056 |
T |
|
| Q |
218 |
tcaacatgt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
29465057 |
tcaacatgt |
29465065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 19847015 - 19847256
Alignment:
| Q |
9 |
ataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcag |
108 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||| ||||| ||||||||| |||||| ||||| |||| ||||||||||||||| ||| |||||| |
|
|
| T |
19847015 |
ataggcccaagaatttctgtagcaacattctttctgagttctcgtgacccaattgaaggtgcatcaaaagtttttggtcctattaaggagctgatttcag |
19847114 |
T |
|
| Q |
109 |
aagaaaacccaccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaa |
208 |
Q |
| |
|
||| |||||||||||||||||||||| || | ||| |||||||| | || ||| | ||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
19847115 |
aagcaaacccaccaatctacaaagacattacaatacaagatttcttatcatattttcatgcaaaaggccttgatgggagttcttccttagagcctttcaa |
19847214 |
T |
|
| Q |
209 |
gttgtgaattcaacatgtaaaggcacttttgatcctcatgga |
250 |
Q |
| |
|
|||||||||||||||| | || || |||||||| ||| |||| |
|
|
| T |
19847215 |
gttgtgaattcaacatatgaatgcgcttttgatactcgtgga |
19847256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 32556171 - 32556122
Alignment:
| Q |
166 |
atgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtga |
215 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||| |||||||| |
|
|
| T |
32556171 |
atgcaaaaggccttgatgggaattctttcttggagcccttcgagttgtga |
32556122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 33768114 - 33768048
Alignment:
| Q |
154 |
tggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtgaattca |
220 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
33768114 |
tggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
33768048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 33761580 - 33761474
Alignment:
| Q |
93 |
aaggaactgctttcagaagaaaacccaccaatctacaaagaccttcccataaaagatttcctggcacattattatgcaaaaggccttgatgggaactctt |
192 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||| | ||| | | | ||||| || |||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
33761580 |
aaggaattgctatcagaagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacattattttacaaaaggccttgatggtaactctt |
33761481 |
T |
|
| Q |
193 |
ccttgca |
199 |
Q |
| |
|
||||||| |
|
|
| T |
33761480 |
ccttgca |
33761474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 33770928 - 33770868
Alignment:
| Q |
147 |
gatttcctggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttca |
207 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
33770928 |
gatttcttggcacattattatgaaaaatctcttgatgggagctcttccttgcagcctttca |
33770868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University