View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_69 (Length: 251)
Name: NF17755_low_69
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7945985 - 7945748
Alignment:
| Q |
1 |
ccccataactctagttttgggcacaaactcaccctctctaggggcaatcttggcaagaccaaaatcagaaagctttggattgaaattttcatccaatagt |
100 |
Q |
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| T |
7945985 |
ccccataactctagttttgggcacaaactcaccctctcttggggcaatcttggcaagaccaaaatcagaaagctttggattgaaattttcatccaatagt |
7945886 |
T |
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| Q |
101 |
atattagacgattttaaatcacgaaaaatcactggtggatctgcgtagttatgcagatattcaagtcctcttgctgatccgttggcaattttcatccttg |
200 |
Q |
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| T |
7945885 |
atattagacgattttaaatcacgaaaaatcaccggtggatctgcgtagttatgcagatattcaagtcctcttgctgctccgttggcaattttcatccttg |
7945786 |
T |
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| Q |
201 |
tatgccaatccaatggttccttatcattacctatatct |
238 |
Q |
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| T |
7945785 |
tatgccaatccaatggttccttatcattacctatatct |
7945748 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 40225245 - 40225330
Alignment:
| Q |
53 |
gcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtatattagacgattttaaatcacgaaaaatcactggtgg |
138 |
Q |
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| T |
40225245 |
gcaagtccaaaatcagagagttttggattgaaattttcatccaagagtatgtttgatgctttgaaatcacgatatatcaccggtgg |
40225330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 19993313 - 19993362
Alignment:
| Q |
53 |
gcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtat |
102 |
Q |
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| T |
19993313 |
gcaagtccaaaatcagaaagctttggattgtagttttcatctaatagtat |
19993362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 10979488 - 10979528
Alignment:
| Q |
53 |
gcaagaccaaaatcagaaagctttggattgaaattttcatc |
93 |
Q |
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| T |
10979488 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
10979528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 11007892 - 11007932
Alignment:
| Q |
53 |
gcaagaccaaaatcagaaagctttggattgaaattttcatc |
93 |
Q |
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| T |
11007892 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
11007932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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